chestnut-quilled rock pigeon, Reference genome, PacBio-HiFi, heart
Dataset size is: 0.00 Bit
This dataset is currently under a short embargo period until September 25, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:aus-avian-consortium-members |
| Access Control Date | 2026-09-25 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| analysis_software | SMRTLink |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/avian_staging/pacbio-hifi/BPAOPS-1905/20250919_AVIAN_BRF_m84118_250919_020818_s3/ |
| bioplatforms_dataset_id | 102.100.100/613555 |
| bioplatforms_library_id | 102.100.100/612158 |
| bioplatforms_project | Australian Avian Genomics Initiative |
| bioplatforms_sample_id | 102.100.100/609831 |
| cell_postion | 1_C01 |
| class | Aves |
| collection_date | 2022-09-07 |
| collector | ANWC |
| common_name | chestnut-quilled rock pigeon |
| country | Australia |
| data_context | Reference genome |
| data_type | PacBio-HiFi |
| date_of_transfer | 2025-09-25 |
| date_of_transfer_to_archive | 2025-09-25 |
| decimal_latitude_public | -12.4911 |
| decimal_longitude_public | 133.0199 |
| dna_treatment | blue pippin size selection of pooled libraries |
| facility_project_code | PacBio_WGS62_1013 |
| facility_sample_id | 1013-3 |
| family | Columbidae |
| flowcell_id | m84118_250919_020818_s3 |
| flowcell_type | Revio SMRT Cells 25M |
| folder_name | 0250919_AVIAN_BRF_m84118_250919_020818_s3 |
| genus | Petrophassa |
| health_state | unknown |
| insert_size_range | 11967.0 |
| latitude | -12.4911 |
| library_comments | Shearing with Microlab Prep |
| library_construction_protocol | Preparing HiFi SMRTbell® Libraries using SMRTbell® prep kit 3.0 |
| library_index_id_dual | bc2039 |
| library_layout | NA |
| library_location | BRF labs |
| library_ng_ul | 69.0 |
| library_prep_date | 2025-09-15 |
| library_prepared_by | Xiangning Liu |
| library_selection | Random |
| library_source | genomic |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| lifestage | unknown |
| location_text | Mikginj Valley, West Arnhem Land; Northern Territory, Australia; -12.4911000000, 133.0199000000; LocID: 21842 |
| longitude | 133.0199 |
| material_extracted_by | CSIRO AGI |
| material_extraction_date | 2025-05-01 |
| material_extraction_type | HMW DNA |
| metadata_revision_date | 2025-07-22 |
| metadata_revision_filename | 20250722_AVIAN_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| movie_length | 30.0 |
| n_libraries_pooled | 3.0 |
| order | Columbiformes |
| phylum | Chordata |
| project_collaborators | Australian National Wildlife Collection (ANWC) |
| project_lead | Anna Kearns |
| sample_collection_type | museum |
| sample_custodian | ANWC |
| sample_id | G52920 |
| sample_id_description | ANWC Genetic Sample Number |
| sample_quality | unknown |
| sample_type | tissue sample |
| scientific_name | Petrophassa rufipennis |
| scientific_name_authorship | Collett, 1898 |
| sequencing_facility | BRF |
| sequencing_kit_chemistry_version | SPRQ |
| sequencing_model | PacBio Revio |
| sequencing_platform | PacBio_SMRT |
| species | rufipennis |
| specimen_custodian | Australian National Wildlife Collection (ANWC) |
| specimen_id | B62055 |
| specimen_id_description | ANWC Specimen Registration Number |
| state_or_region | Northern Territory |
| taxon_id | 471135 |
| taxonomic_group | Bird |
| ticket | BPAOPS-1905 |
| tissue | heart |
| tissue_preservation | RNAlater |
| tissue_preservation_temperature | 4.0 |
| wild_captive | wild |
| work_order | 26016 |