Mitchell's Water Monitor, Reference genome, PacBio-HiFi, blood
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Data Policy
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2026-06-26 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | No restrictions |
| analysis_software | SMRTLink 25.1.0.257715 |
| ancillary_notes | none |
| associated_media | none |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/pacbio-hifi/BPAOPS-1800/20250613_TSI_BRF_m84118_250613_015828_s4/ |
| bioplatforms_project | Threatened Species Initiative |
| cell_postion | 1_D01 |
| certainty | certain |
| class | Reptilia |
| collection_date | 2025-04-29 |
| collection_method | hand caught |
| collector | Ian Brennan, Alana de Laive |
| collector_sample_id | Vmi1 |
| common_name | Mitchell's Water Monitor |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Ian Brennan |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/629193 |
| date_of_transfer | 2025-06-26 |
| date_of_transfer_to_archive | 2025-06-26 |
| death_date | 2025-05-01 |
| facility_project_code | NA |
| facility_sample_id | 948-2 |
| family | Varanidae |
| file_type | bam |
| flowcell_id | m84118_250613_015828_s4 |
| flowcell_type | Revio SMRT Cells 25M |
| folder_name | 20250613_TSI_BRF_m84118_250613_015828_s4 |
| genus | Varanus |
| habitat | rocks behind beach along walking path |
| health_state | healthy, gravid |
| insert_size_range | 17938.0 |
| institution_name | Museum and Art Gallery of the Northern Territory |
| library_construction_protocol | SMRTbell® prep kit 3.0 |
| library_id | 102.100.100/704792 |
| library_index_id_dual | bc2048 |
| library_index_seq_dual | TGATGCTAGTGAGTAT |
| library_location | BRF labs |
| library_ng_ul | 24.6 |
| library_prep_date | 2025-06-05 |
| library_prepared_by | Xiangning Liu |
| library_selection | RANDOM |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | pacbio-hifi |
| lifestage | adult organism |
| location_text | Nightcliff Shoreline |
| material_extracted_by | Ian Brennan |
| material_extraction_date | 2025-05-01 |
| material_extraction_method | PacBio PanDNA NanoBind Kit |
| material_extraction_type | DNA |
| metadata_revision_date | 2025-09-05 |
| metadata_revision_filename | 20250904_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | internal examination, eggs present |
| movie_length | 30.0 |
| n_libraries_pooled | 2.0 |
| order | Squamata |
| phenotypic_sex | female |
| phylum | Chordata |
| prior_genetics | none |
| sample_custodian | Kirsti Abbott |
| sample_id | 102.100.100/668923 |
| sample_quality | collected fresh April 2025 |
| sample_type | whole organism |
| scientific_name | Varanus mitchelli |
| scientific_name_authorship | Mertens, 1958 |
| sequencing_facility | BRF |
| sequencing_kit_chemistry_version | SPRQ |
| sequencing_model | Revio |
| sequencing_platform | PacBio |
| source_population | Darwin, NT, Australia |
| species | mitchelli |
| specimen_id | MAGNT R39801 |
| specimen_id_description | Museum and Art Gallery of the Northern Territory voucher number |
| state_or_region | Northern Territory |
| taxon_id | 62045.0 |
| taxonomic_group | reptile |
| ticket | BPAOPS-1800 |
| tissue_collection | MAGNT R |
| tissue_collection_type | museum |
| tissue_number | MAGNT_R39801_Blood_Vmitchelli |
| tissue_preservation | liquid nitrogen then -80C |
| tissue_preservation_temperature | -80.0 |
| tissue_type | blood |
| type_status | NA |
| wild_captive | wild |
| work_order | 14096 |