Boodie or mitika, Reference genome, PacBio-HiFi, whole blood
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This dataset is currently under a short embargo period until September 15, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2026-09-15 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| analysis_software | SMRT Link Analysis |
| analysis_software_version | NA |
| ancillary_notes | Collected from Arid Recovery as an abandoned joey. Now resides at Kanyana Wildlife Centre in captivity. |
| bait_set_name | NA |
| bait_set_reference | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/pacbio-hifi/BPAOPS-1901/20250912_TSI_AGRF_CAGRF25050076_m84073_250826_143801_s4/ |
| bioplatforms_project | Threatened Species Initiative |
| cell_postion | D01 |
| certainty | certain |
| class | Mammalia |
| collection_date | 2025-07-28 |
| collection_method | blood collected in EDTA tubes by vet under anaesthesia |
| collector | Deanne Cummins | DBCA |
| common_name | Boodie or mitika |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Deanne Cummins | DBCA |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/629213 |
| date_of_transfer | 2025-09-15 |
| date_of_transfer_to_archive | 2025-09-15 |
| dna_treatment | SHEARING |
| experimental_design | NA |
| facility_project_code | CAGRF25050076 |
| facility_sample_id | 683889.0 |
| family | Potoroidae |
| fast5_compression | NA |
| file_type | NA |
| flowcell_id | m84073_250826_143801_s4 |
| flowcell_type | SMRT Cell 25M |
| folder_name | 20250912_TSI_AGRF_CAGRF25050076_m84073_250826_143801_s4 |
| genotypic_sex | male |
| genus | Bettongia |
| insert_size_range | 16000.0 |
| institution_name | Department of Biodiversity, Conservation and Attractions |
| library_comments | NA |
| library_construction_protocol | Preparing whole genome and metagenome libraries using SMRTbell® prep kit 3.0 |
| library_id | 102.100.100/683889 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 325pM |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_date | 2025-08-12 |
| library_prepared_by | Lucas Trevisan |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | pacbio-hifi |
| lifestage | adult organism |
| location_text | Kanyana Wildlife centre |
| material_extracted_by | Australian Genome Research Facility, Biomolecular Resource Facility |
| material_extraction_method | HMW DNA extraction |
| material_extraction_type | DNA |
| metadata_revision_date | 2025-09-05 |
| metadata_revision_filename | 20250904_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | direct_observation |
| model_base_caller | NA |
| movie_length | 30Hrs |
| n_libraries_pooled | 1.0 |
| order | Diprotodontia |
| phenotypic_sex | male |
| phylum | Chordata |
| sample_custodian | Deanne Cummins | DBCA |
| sample_id | 102.100.100/704539 |
| sample_type | tissue sample |
| scientific_name | Bettongia lesueur lesueur |
| scientific_name_authorship | Quoy & Gaimard, 1824 |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Revio SPRQ sequencing plate |
| sequencing_model | PacBio Revio |
| sequencing_platform | PACBIO_SMRT |
| source_population | Arid Recovery |
| species | lesueur |
| specimen_id | T22555 |
| specimen_id_description | DBCA_internal_identifier |
| state_or_region | Western Australia |
| subspecies | lesueur |
| taxon_id | 65621.0 |
| taxonomic_group | mammal |
| ticket | BPAOPS-1901 |
| tissue_collection_type | captive individual |
| tissue_number | T22555 |
| tissue_preservation | EDTA tube |
| tissue_preservation_temperature | -80.0 |
| tissue_type | whole blood |
| wild_captive | captive |
| work_order | NA |