na, Reference genome, PacBio-HiFi, leaf
Dataset size is: 0.00 b
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2026-05-28 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | no restrictions |
| analysis_software | SMRTLink 25.1.0.257715 |
| bait_set_name | RANDOM |
| bait_set_reference | GENOMIC |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/pacbio-hifi/BPAOPS-1786/20250523_TSI_BRF_m84118_250523_020601_s1/ |
| bioplatforms_project | Threatened Species Initiative |
| cell_postion | 1_A01 |
| class | Magnoliopsida |
| collection_date | 2025-01-14 |
| collector | Caroline Cristofolini |
| common_name | na |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Caroline Cristofolini |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/629190 |
| date_of_transfer | 2025-05-28 |
| date_of_transfer_to_archive | 2025-05-29 |
| decimal_latitude_public | -34.1 |
| decimal_longitude_public | 150.8 |
| dna_treatment | Pippin size selection and shearing |
| facility_project_code | NA |
| facility_sample_id | 916-2 |
| family | Haloragaceae |
| file_type | bam |
| flowcell_id | m84118_250523_020601_s1 |
| flowcell_type | Revio SMRT Cells 25M |
| folder_name | 20250523_TSI_BRF_m84118_250523_020601_s1 |
| genotypic_sex | not determined |
| genus | Haloragodendron |
| habitat | open forest of Eucalyptus oreade |
| insert_size_range | 14246.0 |
| institution_name | Australian Botanic Garden Mt Annan |
| latitude | -34.1 |
| library_comments | multiplexed with another samples from TSI |
| library_construction_protocol | SMRTbell® prep kit 3.0 |
| library_id | 102.100.100/678614 |
| library_index_id_dual | bc2042 |
| library_index_seq_dual | TCTGCACTGCGAGTAT |
| library_layout | NA |
| library_location | BRF labs |
| library_ng_ul | 16.28 |
| library_prepared_by | Xiangning Liu |
| library_selection | Pippin size selection, shearing and HiFi prep |
| library_source | Extracted DNA |
| library_strategy | WGS |
| library_type | pacbio-hifi |
| location_text | ABGMA nursery |
| longitude | 150.8 |
| material_conc_ng_ul | 392.0 |
| material_extracted_by | Caroline Cristofolini |
| material_extraction_date | 2025-01-24 |
| material_extraction_method | CTAB |
| material_extraction_type | DNA |
| metadata_revision_date | 2025-09-05 |
| metadata_revision_filename | 20250904_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| movie_length | 30.0 |
| n_libraries_pooled | 3.0 |
| order | Haloragales |
| phenotypic_sex | not determined |
| phylum | Magnoliophyta |
| sample_id | 102.100.100/666693 |
| sample_quality | good |
| sample_type | DNA extract |
| scientific_name | Haloragodendron gibsonii |
| scientific_name_authorship | Peter G.Wilson & M.L.Moody, 2006 |
| scientific_name_note | na |
| sequencing_facility | BRF |
| sequencing_kit_chemistry_version | SPRQ |
| sequencing_model | Revio |
| sequencing_platform | PacBio |
| species | gibsonii |
| specimen_id | AL900252 |
| specimen_id_description | IrisBG database accession number |
| state_or_region | New South Wales |
| subspecies | NA |
| taxon_id | 434541.0 |
| taxonomic_group | Plant |
| ticket | BPAOPS-1786 |
| tissue_collection | Ex-situ collection |
| tissue_number | AL900252_H_gibsonii |
| tissue_preservation | frozen |
| tissue_preservation_temperature | -80.0 |
| tissue_type | leaf |
| work_order | 14093 |