smooth scrub turpentine, Reference genome, PacBio-HiFi, leaf
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Data and Resources
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2026-05-28 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | no restrictions |
| analysis_software | SMRTLink 25.1.0.257715 |
| bait_set_name | RANDOM |
| bait_set_reference | GENOMIC |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/pacbio-hifi/BPAOPS-1786/20250523_TSI_BRF_m84118_250523_020601_s1/ |
| bioplatforms_project | Threatened Species Initiative |
| cell_postion | 1_A01 |
| class | Magnoliopsida |
| collection_date | 2025-01-14 |
| collector | Manuela Cascini |
| common_name | smooth scrub turpentine |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Manuela Cascini |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/629188 |
| date_of_transfer | 2025-05-28 |
| date_of_transfer_to_archive | 2025-05-29 |
| decimal_latitude_public | -34.1 |
| decimal_longitude_public | 150.8 |
| dna_treatment | Pippin size selection and shearing |
| facility_project_code | NA |
| facility_sample_id | 917.0 |
| family | Myrtaceae |
| file_type | bam |
| flowcell_id | m84118_250523_020601_s1 |
| flowcell_type | Revio SMRT Cells 25M |
| folder_name | 20250523_TSI_BRF_m84118_250523_020601_s1 |
| genotypic_sex | not determined |
| genus | Rhodamnia |
| habitat | rainforest |
| insert_size_range | 17779.0 |
| institution_name | Australian Botanic Garden Mt Annan |
| latitude | -34.1 |
| library_comments | multiplexed with another samples from TSI |
| library_construction_protocol | SMRTbell® prep kit 3.0 |
| library_id | 102.100.100/678606 |
| library_index_id_dual | bc2043 |
| library_index_seq_dual | ACGATGACGTGAGTAT |
| library_layout | NA |
| library_location | BRF labs |
| library_ng_ul | 21.8 |
| library_prepared_by | Xiangning Liu |
| library_selection | Pippin size selection, shearing and HiFi prep |
| library_source | Extracted DNA |
| library_strategy | WGS |
| library_type | pacbio-hifi |
| location_text | ABGMA bed33 |
| longitude | 150.8 |
| material_conc_ng_ul | 61.9 |
| material_extracted_by | Manuela Cascini |
| material_extraction_date | 2025-01-24 |
| material_extraction_method | CTAB |
| material_extraction_type | DNA |
| metadata_revision_date | 2025-09-05 |
| metadata_revision_filename | 20250904_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| movie_length | 30.0 |
| n_libraries_pooled | 3.0 |
| order | Myrtales |
| phenotypic_sex | not determined |
| phylum | Streptophyta |
| sample_id | 102.100.100/666685 |
| sample_quality | good |
| sample_type | DNA extract |
| scientific_name | Rhodamnia maideniana |
| scientific_name_authorship | C.T.White, 1937 |
| scientific_name_note | na |
| sequencing_facility | BRF |
| sequencing_kit_chemistry_version | SPRQ |
| sequencing_model | Revio |
| sequencing_platform | PacBio |
| species | maideniana |
| specimen_id | A2013-1013 |
| specimen_id_description | IrisBG database accession number |
| state_or_region | New South Wales |
| subspecies | NA |
| taxon_id | 1619536.0 |
| taxonomic_group | Plant |
| ticket | BPAOPS-1786 |
| tissue_collection | Living collection |
| tissue_number | A2013-1013_Rh_maiden |
| tissue_preservation | frozen |
| tissue_preservation_temperature | -80.0 |
| tissue_type | leaf |
| work_order | 14093 |