yellow scroll coral, Genome resequencing, shaved surface tissue
Dataset size is: 0.00 Bit
This dataset is under an embargo to enable primary access by research partners.
If you would like access this data please contact us here or contact the project lead directly (see details in the table below) for information about the embargo.
The embargo is for the following reason:
Unable to determine correct embargo period.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Reason | Unable to determine correct embargo period. |
| Access Control Mode | closed |
| Sequence Data Type | illumina-shortread |
| access_rights | C.Ross |
| ala_specimen_url | NA |
| analysis_software | bclconvert |
| analysis_software_version | 4.3.6 |
| ancillary_notes | NA |
| associated_media | NA |
| bait_set_name | N/A |
| bait_set_reference | N/A |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/illumina-shortread/BPAOPS-1958/20251202_TSI_GWA_KQ1526_A22FJHNLT1/ |
| bioplatforms_project | Threatened Species Initiative |
| cell_postion | N/A |
| certainty | not determined |
| class | Hexacorallia |
| collection_method | side_cutters |
| collector | Claire Ross |
| collector_sample_id | see specimen_id, which is unique Field number |
| common_name | yellow scroll coral |
| country | Australia |
| data_context | Genome resequencing |
| data_custodian | Kate Quigley |
| dataset_id | 102.100.100/629233 |
| dna_treatment | Bead cleanup, shearing, vacuum spin |
| facility_project_code | NA |
| facility_sample_id | 683339.0 |
| family | Dendrophylliidae |
| fast5_compression | N/A |
| file_type | fastq |
| flow_cell_id | A22FJHNLT1 |
| flowcell_id | A22FJHNLT1 |
| flowcell_type | NovaSeqX 1.5B |
| genotypic_sex | hermaphrodite |
| genus | Turbinaria |
| habitat | Reef |
| health_state | NA |
| insert_size_range | 438.0 |
| institution_name | DBCA |
| library_comments | Meets read requirement. |
| library_construction_protocol | DNA WGS |
| library_id | 683339 |
| library_index_id | H5 |
| library_index_seq_dual | ATGAGAAC |
| library_index_sequence | GTCCTATA |
| library_layout | paired end |
| library_location | Freezer 13 |
| library_ng_ul | 30.7 |
| library_pcr_cycles | 8.0 |
| library_prep_date | 2025-08-15 |
| library_prepared_by | Hadi Shamaileh |
| library_strategy | Samples were cleaned with AMPure beads, sheared with Covaris sonicator, library constructed with Agilent SureSelect HS2 kit |
| library_type | Illumina-shortread |
| lifestage | adult |
| location_text | Little Boat Harbour |
| material_extracted_by | Ramesh |
| material_extraction_date | 2025-04-30 |
| material_extraction_method | Waynes Method |
| material_extraction_type | Tissue and skeleton |
| metadata_revision_date | 2025-09-05 |
| metadata_revision_filename | 20250904_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | not determined |
| model_base_caller | N/A |
| movie_length | N/A |
| n_libraries_pooled | 64.0 |
| order | Scleractinia |
| phenotypic_sex | not determined |
| phylum | Cnidaria |
| prior_genetics | No |
| sample_custodian | C.Ross |
| sample_id | 102.100.100/671317 |
| sample_quality | fresh |
| sample_type | tissue sample |
| scientific_name | Turbinaria reniformis |
| scientific_name_authorship | Bernard, 1896 |
| scientific_name_note | NA |
| sequencing_facility | Genomics WA - Harry Perkins institute |
| sequencing_kit_chemistry_version | NovaSeqx |
| sequencing_model | NovaSeqX |
| sequencing_platform | Illumina |
| source_population | Bremer Bay |
| species | reniformis |
| specimen_id | BR.10 |
| specimen_id_description | DBCA Field number |
| state_or_region | WA |
| subspecies | Evans_SNP_type2 |
| taxon_id | 1381352.0 |
| taxonomic_group | Invertebrate |
| ticket | BPAOPS-1958 |
| tissue_collection | Turb_samples |
| tissue_collection_type | DBAC collection |
| tissue_number | BR.10 |
| tissue_preservation | 100%_ethanol |
| tissue_preservation_temperature | room_temp |
| tissue_type | shaved surface tissue |
| type_status | No |
| wild_captive | Wild |
| work_order | 14106 |