Corangamite Water Skink, Transcriptome, Illumina-shortread, kidney, gonads

Scincidae, Eulamprus tympanum, NMV D76585, reptile, Project Lead: Joanna Sumner

Dataset size is: 0.00 b

Log in or Register to access resource
 
 

 

Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members
Access Control Date 2026-06-27
Access Control Mode date
Sequence Data Type illumina-shortread
access_rights No restrictions
ala_specimen_url NA
analysis_software NovaSeq X Control Software v1.2.2.48004; Real Time Analysis v4.6.7; Dragen BCL Convert vt 07.031.732.4.3.6.
ancillary_notes NA
associated_media NA
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/illumina-shortread/BPAOPS-1804/20250627_TSI_AGRF_CAGRF24050494_233M7GLT3/
bioplatforms_project Threatened Species Initiative
ccg_jira_ticket BPAOPS-1804
certainty high
class Reptilia
collection_date 2023-12-01
collection_method fishing rod with floss lasso
collector Joanna Sumner
common_name Corangamite Water Skink
country Australia
data_context Transcriptome
data_custodian Joanna Sumner
data_type Illumina-shortread
dataset_id 102.100.100/358883
date_of_transfer 2025-06-27
date_of_transfer_to_archive 2025-06-27
death_date 2023-12-01
facility_code CAGRF24050494
facility_project_code CAGRF24050494
facility_sample_id 19444-1
family Scincidae
flow_cell_id 233M7GLT3
flowcell_id 233M7GLT3
flowcell_type 10B-300
folder_name 20250627_TSI_AGRF_CAGRF24050494_233M7GLT3
genotypic_sex not determined
genus Eulamprus
habitat volcanic rocks at edge of lake
health_state good
insert_size_range 379.0
institution_name Museums Victoria
library_construction_protocol Illumina Stranded mRNA
library_id 625827
library_index_seq_dual UDP0284-F & UDP0284-R
library_location AGRF Melbourne
library_ng_ul 70.5
library_oligo_sequence_dual AGCTGGAATG-ACGGAATGCG
library_prep_date 2025-06-14
library_prepared_by JM
library_source RNA
library_type illumina-transcriptomics
lifestage adult
location_text Dreeite Nature Conservation Reserve
material_conc_ng_ul 37.9
material_extracted_by Joanna Sumner, Museums Victoria Research Institute
material_extraction_date 2024-03-21
material_extraction_method Qiagen Rneasy mini kit
material_extraction_type RNA
metadata_revision_date 2025-09-05
metadata_revision_filename 20250904_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx
method_of_determination dissection
order Squamata
phenotypic_sex female
phylum Chordata
prior_genetics NA
sample_custodian Hutchinson & Rawlinson 1995
sample_id 102.100.100/624849
sample_quality fresh frozen high quality
sample_type tissue sample
scientific_name Eulamprus tympanum marnieae
scientific_name_authorship Hutchinson & Rawlinson, 1995
scientific_name_note NCBI taxon ID is forspecies, not specific to this sub-species
sequencing_facility AGRF
sequencing_kit_chemistry_version XLEAP SBS
sequencing_model X Plus
sequencing_platform NovaSeq
species tympanum
specimen_id NMV D76585
specimen_id_description Museums Victoria voucher registration number
state_or_region Victoria
subspecies marnieae
taxon_id 204908.0
taxonomic_group reptile
ticket BPAOPS-1804
tissue_collection Ian Potter Australian Wildlife Biobank
tissue_collection_type museum
tissue_number NMV Z75450
tissue_preservation frozen
tissue_preservation_temperature frozen, -80, -196
tissue_type kidney, gonads
wild_captive wild
work_order 14071