Orange-bellied Parrot, Population Genetics, Illumina FASTQ, blood on filter paper
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This dataset is currently under a short embargo period until September 2, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2026-09-02 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| ala_specimen_url | NA |
| analysis_software | BCLConvert |
| analysis_software_version | 4.3.6 |
| ancillary_notes | NA |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/illumina-fastq/BPAOPS-1891/20250829_TSI_UNSW_22YFWNLT4/ |
| bioplatforms_project | Threatened Species Initiative |
| birth_date | 2018-12-25 |
| ccg_jira_ticket | BPAOPS-1891 |
| certainty | not determined |
| class | Aves |
| collection_date | 2019-06-21 |
| common_name | Orange-bellied Parrot |
| country | Australia |
| data_context | Population Genetics |
| data_custodian | Soleille Miller |
| data_type | Illumina FASTQ |
| dataset_id | 102.100.100/629210 |
| date_of_transfer | 2025-09-02 |
| date_of_transfer_to_archive | 2025-09-04 |
| facility_project_code | Q0017927 |
| facility_sample_id | MIL16004A34 |
| family | Psittaculidae |
| file_type | fastq.gz |
| flowcell_id | 22YFWNLT4 |
| flowcell_type | NovaSeq X 25B |
| folder_name | 20250829_TSI_UNSW_22YFWNLT4 |
| genotypic_sex | not determined |
| genus | Neophema |
| health_state | yes_immune_response |
| institution_name | AM/USYD/ANU |
| library_construction_protocol | Illumina DNA PCR Free Prep |
| library_id | 102.100.100/683640 |
| library_index_id | UDP0066 |
| library_index_seq | ATACCAACGC-AATTGCTGCG |
| library_layout | paired end |
| library_location | Ramaciotti Centre for Genomics |
| library_pcr_cycles | N/A |
| library_prep_date | 2025-08-12 |
| library_prepared_by | Ramaciotti Centre for Genomics |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | illumina-shortread |
| lifestage | juvenile stage |
| material_conc_ng_ul | 16.7 |
| material_extracted_by | Soleille Miller |
| material_extraction_date | 2025-07-04 |
| material_extraction_method | Salting-out |
| material_extraction_type | DNA |
| metadata_revision_date | 2025-09-05 |
| metadata_revision_filename | 20250904_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | not determined |
| n_libraries_pooled | 42.0 |
| order | Psittaciformes |
| phenotypic_sex | Male |
| phylum | Animalia |
| prior_genetics | NA |
| sample_custodian | Australian Museum |
| sample_id | 102.100.100/671606 |
| sample_type | tissue |
| scientific_name | Neophema chrysogaster |
| scientific_name_authorship | Latham, 1795 |
| scientific_name_note | first described by Latham as Psittacus chrysogaster, Tommaso Salvadori erected the new genus Neophema in 1891, placing the orange-bellied parrot within it and gave it its current scientific name |
| sequencing_facility | Ramaciotti |
| sequencing_kit_chemistry_version | version 1.0 |
| sequencing_model | Illumina NovaSeq X Plus |
| sequencing_platform | ILLUMINA |
| source_population | captive |
| species | chrysogaster |
| specimen_id | O.83682.001 |
| specimen_id_description | Australian Museum sample registration number |
| taxon_id | 678615.0 |
| taxonomic_group | bird |
| ticket | BPAOPS-1891 |
| tissue_collection | Australian Museum Frozen Tissue Collection |
| tissue_collection_type | museum |
| tissue_number | AM_83682 |
| tissue_preservation | frozen, dried |
| tissue_preservation_temperature | -80.0 |
| tissue_type | blood on filter paper |
| wild_captive | captive |