smooth scrub turpentine, population genetics, Illumina FASTQ, leaf
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This dataset is currently under a short embargo period until August 8, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2026-08-08 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| access_rights | no restrictions |
| analysis_software | BCLConvert |
| analysis_software_version | 4.3.6 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/illumina-fastq/BPAOPS-1850/20250731_TSI_UNSW_233T7CLT3/ |
| bioplatforms_project | Threatened Species Initiative |
| ccg_jira_ticket | BPAOPS-1850 |
| class | Magnoliopsida |
| collection_date | 2025-05-05 |
| collector | Manuela Cascini |
| common_name | smooth scrub turpentine |
| country | Australia |
| data_context | population genetics |
| data_custodian | Manuela Cascini |
| data_type | Illumina FASTQ |
| dataset_id | 102.100.100/629199 |
| date_of_transfer | 2025-08-08 |
| date_of_transfer_to_archive | 2025-08-07 |
| decimal_latitude_public | -28.5 |
| decimal_longitude_public | 153.6 |
| facility_project_code | Q0017498 |
| facility_sample_id | CAS15509A7 |
| family | Myrtaceae |
| file_type | fastq.gz |
| flowcell_id | 233T7CLT3 |
| flowcell_type | NovaSeq X 10B |
| folder_name | 20250731_TSI_UNSW_233T7CLT3 |
| genotypic_sex | not determined |
| genus | Rhodamnia |
| habitat | rainforest |
| insert_size_range | 150bp PE |
| institution_name | Australian Botanic Garden Mt Annan |
| latitude | -28.5 |
| library_construction_protocol | Illumina DNA PCR Free Prep |
| library_id | 102.100.100/681872 |
| library_index_id_dual | UDP0175 |
| library_index_seq_dual | GGACCAGTGG-CGCGAGCCTA |
| library_layout | paired end |
| library_location | Ramaciotti Centre for Genomics |
| library_ng_ul | 1.72 |
| library_pcr_cycles | N/A |
| library_pcr_reps | N/A |
| library_prep_date | 2025-07-28 |
| library_prepared_by | Ramaciotti Centre for Genomics |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | illumina-shortread |
| location_text | Billinudgel |
| longitude | 153.6 |
| material_conc_ng_ul | 53.5 |
| material_extracted_by | Manuela Cascini |
| material_extraction_date | 2025-05-24 |
| material_extraction_method | QIAGEN Plant Pro kit |
| material_extraction_type | DNA |
| metadata_revision_date | 2025-09-05 |
| metadata_revision_filename | 20250904_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| n_libraries_pooled | 8.0 |
| order | Myrtales |
| phenotypic_sex | not determined |
| phylum | Streptophyta |
| sample_id | 102.100.100/669880 |
| sample_quality | good |
| sample_type | DNA extract |
| scientific_name | Rhodamnia maideniana |
| scientific_name_authorship | C.T.White, 1944 |
| sequencing_facility | Ramaciotti |
| sequencing_kit_chemistry_version | version 1.0 |
| sequencing_model | Illumina NovaSeq X Plus |
| sequencing_platform | ILLUMINA |
| species | maideniana |
| specimen_id | P2024-0603 |
| specimen_id_description | ABGMA nursery ID |
| state_or_region | New South Wales |
| taxon_id | 1619536.0 |
| taxonomic_group | Plant |
| ticket | BPAOPS-1850 |
| tissue_collection | ABGMA nursery |
| tissue_collection_type | Living collection |
| tissue_number | NSW1159590 |
| tissue_preservation | frozen |
| tissue_preservation_temperature | -80.0 |
| tissue_type | leaf |
| work_order | 14099 |