northern shield-backed trapdoor spider, Reference genome, Illumina-HiC, legs/cephalothorax
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This dataset is currently under a short embargo period until August 20, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2026-08-20 |
| Access Control Mode | date |
| Sequence Data Type | illumina-hic |
| access_rights | Location information restricted |
| analysis_software | 4.1.23 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/genomics-hi-c/BPAOPS-1876/20250820-232K7NLT3-WO27005-WO14101/20250820_TSI_BRF_629208_232K7NLT3/ |
| bioplatforms_project | Threatened Species Initiative |
| ccg_jira_ticket | BPAOPS-1876 |
| certainty | certain |
| class | Arachnida |
| collection_date | 2024-08-01 |
| collection_method | excavated from burrow |
| collector | J.D. Wilson, T. Smith, M.S. Harvey |
| common_name | northern shield-backed trapdoor spider |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Rowan Lymbery |
| data_type | Illumina-HiC |
| dataset_id | 102.100.100/629208 |
| date_of_transfer | 2025-08-20 |
| date_of_transfer_to_archive | 2025-08-22 |
| death_date | 2024-08-01 |
| dna_treatment | FA crosslinking |
| facility_project_code | NA |
| facility_sample_id | 683184_TSI_BRF_232K7NLT3_TCAGAGGT-AATGGAAC |
| family | Idiopidae |
| flowcell_id | 232K7NLT3 |
| flowcell_type | NovaSeq X 10B |
| folder_name | 20250820-232K7NLT3-WO27005-WO14101 |
| genus | Idiosoma |
| health_state | healthy |
| insert_size_range | ~600bp |
| institution_name | Department of Biodiversity, Conservation and Attractions |
| library_construction_protocol | HiC Arima 2.0 |
| library_id | 683184 |
| library_index_id | Arima_30_F04 |
| library_index_id_dual | Arima_30_F04 |
| library_index_seq | TCAGAGGT |
| library_index_seq_dual | AATGGAAC |
| library_layout | Paired end |
| library_location | BRF Freezer |
| library_ng_ul | 1.0 |
| library_oligo_sequence | CAAGCAGAAGACGGCATACGAGATtcagaggtCTGTCTCTTATACACATCTCCGAGCCCACGAGAC |
| library_oligo_sequence_dual | AATGATACGGCGACCACCGAGATCTACACaatggaacTCGTCGGCAGCGTCAGATGTGTATAAGAGACAG |
| library_pcr_cycles | 8 |
| library_pcr_reps | 1 |
| library_prepared_by | Max Nekrasov |
| library_selection | Restriction digest |
| library_source | GENOMIC |
| library_strategy | HiC |
| library_type | Illumina-HiC |
| lifestage | adult |
| location_text | Wanjarri Nature Reserve |
| metadata_revision_date | 2025-09-05 |
| metadata_revision_filename | 20250904_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | external morphology |
| n_libraries_pooled | 1 |
| order | Araneae |
| phenotypic_sex | female |
| phylum | Arthropoda |
| sample_custodian | Kym Ottewell | DBCA |
| sample_id | 102.100.100/671158 |
| sample_type | Tissue sample |
| scientific_name | Idiosoma clypeatum |
| scientific_name_authorship | Rix and Harvey 2018 |
| sequencing_facility | BRF |
| sequencing_kit_chemistry_version | DRAGEN BCLConvert |
| sequencing_model | NovaSeq X |
| sequencing_platform | Illumina |
| source_population | Wanjarri Nature Reserve |
| species | clypeatum |
| state_or_region | Western Australia |
| taxon_id | 2250261 |
| taxonomic_group | arachnid |
| ticket | BPAOPS-1876 |
| tissue_collection | DBCA |
| tissue_collection_type | Wild organism |
| tissue_number | T21125 |
| tissue_preservation | -80C |
| tissue_preservation_temperature | -80.0 |
| tissue_type | legs/cephalothorax |
| wild_captive | wild |
| work_order | 14101 |