Eastern underground orchid, Reference genome, Illumina-HiC, 10 buds from single inflorescence
Dataset size is: 0.00 Bit
This dataset is currently under a short embargo period until August 20, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2026-08-20 |
| Access Control Mode | date |
| Sequence Data Type | illumina-hic |
| access_rights | Location information restricted |
| ala_specimen_url | https://bie.ala.org.au/species/https://id.biodiversity.org.au/taxon/apni/5141299 |
| analysis_software | 4.1.23 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/genomics-hi-c/BPAOPS-1876/20250820-232K7NLT3-WO27005-WO14101/20250820_TSI_BRF_629203_232K7NLT3/ |
| bioplatforms_project | Threatened Species Initiative |
| ccg_jira_ticket | BPAOPS-1876 |
| certainty | certain |
| class | Magnoliopsida |
| collection_date | 2024-09-27 |
| collection_method | picked |
| collector | Rod Peakall |
| collector_sample_id | 24008.0 |
| common_name | Eastern underground orchid |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Rod Peakall |
| data_type | Illumina-HiC |
| dataset_id | 102.100.100/629203 |
| date_of_transfer | 2025-08-20 |
| date_of_transfer_to_archive | 2025-08-22 |
| dna_treatment | FA crosslinking |
| facility_project_code | NA |
| facility_sample_id | 682097_TSI_BRF_232K7NLT3_AAGTGTCT-GCAGGTTC |
| family | Orchidaceae |
| flowcell_id | 232K7NLT3 |
| flowcell_type | NovaSeq X 10B |
| folder_name | 20250820-232K7NLT3-WO27005-WO14101 |
| genus | Rhizanthella |
| habitat | Eucalyptus forest |
| insert_size_range | ~600bp |
| institution_name | ANU |
| library_construction_protocol | HiC Arima 2.0 |
| library_id | 682097 |
| library_index_id | Arima_8_H01 |
| library_index_id_dual | Arima_8_H01 |
| library_index_seq | AAGTGTCT |
| library_index_seq_dual | GCAGGTTC |
| library_layout | Paired end |
| library_location | BRF Freezer |
| library_ng_ul | 1.0 |
| library_oligo_sequence | CAAGCAGAAGACGGCATACGAGATaagtgtctCTGTCTCTTATACACATCTCCGAGCCCACGAGAC |
| library_oligo_sequence_dual | AATGATACGGCGACCACCGAGATCTACACgcaggttcTCGTCGGCAGCGTCAGATGTGTATAAGAGACAG |
| library_pcr_cycles | 8 |
| library_pcr_reps | 1 |
| library_prepared_by | Max Nekrasov |
| library_selection | Restriction digest |
| library_source | GENOMIC |
| library_strategy | HiC |
| library_type | Illumina-HiC |
| lifestage | adult |
| location_text | Bulahdelah (precise details withhold as a condition of permit) |
| material_conc_ng_ul | NA |
| material_extracted_by | NA |
| material_extraction_method | BRF Arima kit |
| material_extraction_type | flower tissue for HiC |
| metadata_revision_date | 2025-09-05 |
| metadata_revision_filename | 20250904_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| n_libraries_pooled | 1 |
| order | Asparagales |
| phenotypic_sex | hermaphrodite |
| phylum | Streptophyla |
| sample_custodian | Rod Peakall |
| sample_id | 102.100.100/670094 |
| sample_type | Single inflorescence |
| scientific_name | Rhizanthella slateri |
| scientific_name_authorship | (Rupp) M.A.Clem. & P.J.Cribb, 1984 |
| sequencing_facility | BRF |
| sequencing_kit_chemistry_version | DRAGEN BCLConvert |
| sequencing_model | NovaSeq X |
| sequencing_platform | Illumina |
| species | slateri |
| specimen_id | RHIZslat2401 |
| specimen_id_description | Peakall lab unique inflorescence field collection number |
| state_or_region | New South Wales |
| taxon_id | 177053.0 |
| taxonomic_group | plant |
| ticket | BPAOPS-1876 |
| tissue_collection | Peakall lab field collection |
| tissue_collection_type | Living in wild |
| tissue_number | RHIZslat2401-Buds-24008 |
| tissue_preservation | liquid nitrogen |
| tissue_preservation_temperature | -80.0 |
| tissue_type | 10 buds from single inflorescence |
| wild_captive | wild |
| work_order | 14101 |