PPA, Phenomics, Plant imaging - PhenoCT Xray, Dataset ID: 453277, Raw data

Faba bean, fava bean, SARDI_Dr Lachlan Lake (field trial), SARDI_Dr Julie Hayes (prepared samples)

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Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:365:ppa-consortium-members
Access Control Date 2025-01-01
Access Control Mode date
Sequence Data Type xray-raw
analytical_platform PhenoCT X-Ray
base_url https://downloads-qcif.bioplatforms.com/bpa/ppa_staging/xray-raw/BPAOPS-1502/20231027_APPF_453277/
bioplatforms_dataset_id 102.100.100/453277
bioplatforms_project Plant Protein Atlas (PPA)
class Magnoliopsida
collector Ruwan Lenorage, SARDI
common_name Faba bean, fava bean
country Australia
data_context Plant imaging - PhenoCT Xray
data_type Main dataset
date_of_transfer 2023-10-31
date_of_transfer_to_archive 2023-10-31
description PhenoCT X-Ray data
experiment_type Field trial
facility APPF
facility_project_code 0676_Faba_bean__BPA_Plant_protein_atlas_LaTrobe
family Fabaceae
file_description This file contains the raw X-ray attenuation values for each voxel. The data are 16bit unsigned integers, measuring raw attenuation. The file has a 2KB header, which contains some metadata information, importantly, the dimensions of the 3D array are stored in the 4th, 2nd and 1st 16 bit (2 Byte) values respectively.
genus Vicia
initiative_code PPA
metadata_revision_date 2023-10-27
metadata_revision_filename Sample_ID_Faba_bean_2023-06-15_120_samples_forQCIF.xlsx
omics Phenomics
order Fabales
phenomics_facility Australian Plant Phenomics Facility
phylum Streptophyta
planting_season 2022
raw_or_analysed_data Raw data
sample_collection_type Field trial
sample_type Mature grain
scientific_name Vicia faba
species faba
specimen_custodian SARDI_Dr Lachlan Lake (field trial), SARDI_Dr Julie Hayes (prepared samples)
taxon_id 3906
taxonomic_group Plant
ticket BPAOPS-1502
tissue Mechanically de-hulled grain pieces (transcriptome), mechanically de-hulled and finely milled grain (proteome, metabolome, fibre)
tissue_preservation Snap frozen (transcriptome, metabolome)
tissue_preservation_temperature -80°C (transcriptome, metabolome), 4°C (proteome, fibre)
variety_commercial Y
wild_captive Cultivated
x_ray_current 6.0
x_ray_dosage 2.95
x_ray_exposure_time 250.0
x_ray_filter 0.5mm Copper
x_ray_scanning_time 420.0
x_ray_voltage 200.0
x_ray_voxel_resolution 84.0