Plant Pathogen, Genomics, PacBio HiFi, Sample ID 396214
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This dataset is currently under a short embargo period until November 3, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
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Data Policy
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:pp-prj068 |
| Access Control Date | 2026-11-03 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| analysis_software | SMRTLink |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/pp_staging/pacbio-hifi/BPAOPS-1940/20251031_PP_BRF_m84118_251031_003607_s2/ |
| bioplatforms_dataset_id | 102.100.100/399082 |
| bioplatforms_library_id | 102.100.100/398625 |
| bioplatforms_project | Plant Pathogen Initiative |
| bioplatforms_project_code | PP068_Phytophthora |
| bioplatforms_sample_id | 102.100.100/396214 |
| ccg_jira_ticket | BPAOPS-1940 |
| cell_postion | 1_D01 |
| class | Oomycetes |
| collection_date | 2019-06-13 |
| collection_method | Soil baiting |
| collector | Pegg, K. |
| collector_sample_id | Pc1-LR |
| country | Australia |
| data_context | Genomics |
| data_type | PacBio |
| date_data_published | 05/11/2025 |
| date_of_transfer | 2025-11-03 |
| date_of_transfer_to_archive | 2025-11-04 |
| description | PacBio-HiFi |
| download | https://data.bioplatforms.com/dataset/?ext_search_by=&q=ticket%3ABPAOPS-1940 |
| facility | BRF |
| facility_project_code | 1058.0 |
| facility_sample_id | 1058-1 |
| family | Peronosporaceae |
| flowcell_id | m84118_251031_003607_s2 |
| flowcell_type | Revio SMRT Cells 25M |
| folder_name | 20251031_PP_BRF_m84118_251031_003607_s2 |
| genus | Phytophthora |
| host_common_name | Pineapple |
| host_family | Bromeliaceae |
| host_organ | Soil |
| host_scientific_name | Ananas comosus |
| host_status | Cultivated crop |
| insert_size_range | 14514.0 |
| library_comments | Shearing with Microlab Prep |
| library_construction_protocol | Preparing HiFi SMRTbell® Libraries using SMRTbell® prep kit 3.0 |
| library_id | 398625 |
| library_index_id_dual | bc2065 |
| library_index_seq_dual | TGAGCTATGCGAGTAT |
| library_layout | NA |
| library_location | BRF labs |
| library_ng_ul | 25.1 |
| library_prep_date | 2025-10-30 |
| library_prepared_by | Xiangning Liu |
| library_selection | Random |
| library_source | Genomic |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| location_text | Beerwah, Private grower |
| material_extracted_by | Joy Conroy/ QDPI |
| material_extraction_date | 2025-09-28 |
| material_extraction_method | Phenol/chloroform/CTAB |
| material_extraction_type | gDNA |
| metadata_revision_date | 2025-11-19 |
| metadata_revision_filename | 2025-11-14_Combined_Plant_Pathogen_sample_metadata_forQCIF_removelatlong.xlsx |
| movie_length | 30.0 |
| n_libraries_pooled | 1.0 |
| order | Peronosporales |
| phylum | Oomycota |
| project_lead | Sarah Dodd | Queensland Department of Primary Industries |
| sample_collection_type | Herbarium |
| sample_custodian | Ken Pegg, Queensland DPI |
| sample_id | 396214 |
| sample_type | Living culture |
| scientific_name | Phytophthora cinnamomi |
| scientific_name_authorship | Rands (1922) |
| sequencing_facility | Biomolecular Resource Facility |
| sequencing_kit_chemistry_version | SPRQ |
| sequencing_model | PacBio Revio |
| sequencing_platform | PacBio_SMRT |
| species | cinnamomi |
| specimen_custodian | NSW Plant pathology & Mycology Herbarium (DAP) |
| specimen_id | DAR 87225 |
| specimen_id_description | NSW Plant pathology & Mycology Herbarium (DAP) |
| state_or_region | Queensland |
| taxon_id | 4785 |
| taxonomic_group | Fungi |
| ticket | BPAOPS-1940 |
| work_order | 20071 |