Plant Pathogen, Genomics, PacBio HiFi, Sample ID 396067
Dataset size is: 0.00 Bit
This dataset is currently under a short embargo period until November 7, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:pp-prj065 |
| Access Control Date | 2026-11-07 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| analysis_software | SMRT Link Analysis |
| bait_set_name | NA |
| bait_set_reference | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/pp_staging/pacbio-hifi/BPAOPS-1944/20251106_PP_AGRF_CAGRF25060039_m84073_251031_055101_s2/ |
| bioplatforms_dataset_id | 102.100.100/399078 |
| bioplatforms_library_id | 102.100.100/398478 |
| bioplatforms_project | Plant Pathogen Initiative |
| bioplatforms_project_code | PP065_Neo |
| bioplatforms_sample_id | 102.100.100/396067 |
| ccg_jira_ticket | BPAOPS-1944 |
| cell_postion | A01 |
| class | Sordariomycetes |
| collection_date | 2023-01-12 |
| collector | Taguiam, JD. |
| country | Australia |
| data_context | Genomics |
| data_type | PacBio-HiFi |
| date_data_published | 12/11/2025 |
| date_of_transfer | 2025-11-07 |
| date_of_transfer_to_archive | 2025-11-10 |
| decimal_latitude_public | -27.58 |
| decimal_longitude_public | 153.12 |
| description | PacBio-HiFi |
| dna_treatment | SHEARING |
| download | https://data.bioplatforms.com/dataset/?ext_search_by=&q=ticket:BPAOPS-1944 |
| experimental_design | NA |
| facility | AGRF |
| facility_project_code | CAGRF25060039 |
| facility_sample_id | 396067 |
| family | Sporocadaceae |
| fast5_compression | NA |
| flowcell_id | m84073_251031_055101_s2 |
| flowcell_type | SMRT Cell 25M |
| folder_name | 20251106_PP_AGRF_CAGRF25060039_m84073_251031_055101_s2 |
| genus | Neopestalotiopsis |
| host_common_name | Persimmon |
| host_family | Ebenaceae |
| host_organ | Calyx |
| host_scientific_name | Diospyros kaki |
| host_status | Cultivated horticultural |
| host_symptom | Spots |
| insert_size_range | 7000.0 |
| library_comments | NA |
| library_construction_protocol | Preparing whole genome and metagenome libraries using SMRTbell® prep kit 3.0 |
| library_id | 398478 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 325pM |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_prepared_by | Lucas Trevisan |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | HiFi |
| location_text | orchard in Rochedale |
| material_extracted_by | Darby Taguiam / Charles Sturt University |
| material_extraction_method | CTAB |
| material_extraction_type | gDNA |
| metadata_revision_date | 2025-11-19 |
| metadata_revision_filename | 2025-11-14_Combined_Plant_Pathogen_sample_metadata_forQCIF_removelatlong.xlsx |
| model_base_caller | NA |
| movie_length | 30Hrs |
| n_libraries_pooled | 1.0 |
| order | Amphisphaeriales |
| phylum | Ascomycota |
| project_lead | (John) Darby Taguiam | Charles Sturt University |
| sample_collection_type | Living collection |
| sample_custodian | Sandra Savocchia / Charles Sturt University |
| sample_id | 396067 |
| sample_type | Pure culture |
| scientific_name | Neopestalotiopsis maddoxii |
| scientific_name_authorship | Prasannath, Akinsanmi & R.G. Shivas, 2021 |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Revio SPRQ sequencing plate |
| sequencing_model | PacBio Revio |
| sequencing_platform | PACBIO_SMRT |
| species | maddoxii |
| specimen_custodian | Charles Sturt University Fungal Repository |
| specimen_id | DAR 87668 |
| specimen_id_description | Charles Sturt University Fungal Repository |
| state_or_region | Queensland |
| taxon_id | 2877243 |
| taxonomic_group | Fungi |
| ticket | BPAOPS-1944 |