Plant Pathogen, Genomics, PacBio HiFi, Sample ID 395717
Dataset size is: 0.00 Bit
This dataset is currently under a short embargo period until October 10, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:pp-prj028 |
| Access Control Date | 2026-10-10 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| analysis_software | SMRT Link Analysis v25.1.0.257715 |
| bait_set_name | NA |
| bait_set_reference | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/pp_staging/pacbio-hifi/BPAOPS-1919/20251003_PP_AGRF_CAGRF23110024_m84073_251003_064905_s4/ |
| bioplatforms_dataset_id | 102.100.100/399045 |
| bioplatforms_library_id | 102.100.100/397971 |
| bioplatforms_project | Plant Pathogen Initiative |
| bioplatforms_project_code | PP028_L_maculans |
| bioplatforms_sample_id | 102.100.100/395717 |
| ccg_jira_ticket | BPAOPS-1919 |
| cell_postion | D01 |
| class | Dothideomycetes |
| collection_method | Ascospore |
| collection_permit | N/A |
| collector | Marie-Helene Balesdent |
| collector_sample_id | v.23.1.3 |
| common_name | Blackleg |
| country | France |
| data_context | Genomics |
| data_type | PacBio |
| date_data_published | 13/10/2025 |
| date_of_transfer | 2025-10-10 |
| date_of_transfer_to_archive | 2025-10-10 |
| description | PacBio-HiFi |
| dna_treatment | SHEARING |
| download | https://data.bioplatforms.com/dataset/?ext_search_by=&q=ticket%3ABPAOPS-1919 |
| experimental_design | NA |
| facility | AGRF |
| facility_project_code | CAGRF23110024 |
| facility_sample_id | 395717 |
| family | Leptosphaeriaceae |
| fast5_compression | NA |
| flowcell_id | m84073_251003_064905_s4 |
| flowcell_type | SMRT Cell 25M |
| folder_name | 20251003_PP_AGRF_CAGRF23110024_m84073_251003_064905_s4 |
| genus | Leptosphaeria |
| host_common_name | Canola |
| host_family | Brassicaceae |
| host_organ | N/A |
| host_scientific_name | Brassica napus |
| host_status | N/A |
| host_symptom | in vitro cross |
| insert_size_range | 10000.0 |
| library_comments | NA |
| library_construction_protocol | Amplifying genomic DNA for SMRTbell library preparation and HiFi sequencing |
| library_id | 397971 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 160pM |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_prep_date | 2025-09-14 |
| library_prepared_by | Trent Peters |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| life_stage | Ascospore |
| location_text | N/A |
| material_extracted_by | Allira Baericke | University of Melbourne |
| material_extraction_date | 2024-07-01 |
| material_extraction_type | gDNA |
| metadata_revision_date | 2025-11-19 |
| metadata_revision_filename | 2025-11-14_Combined_Plant_Pathogen_sample_metadata_forQCIF_removelatlong.xlsx |
| model_base_caller | NA |
| movie_length | 30Hrs |
| n_libraries_pooled | 5.0 |
| order | Pleosporales |
| phylum | Ascomycota |
| project_lead | Angela van de Wouw | Alexander Idnurm | University of Melbourne |
| sample_collection_type | University |
| sample_custodian | Angela van de Wouw | Alexander Idnurm | University of Melbourne |
| sample_id | 395717 |
| sample_type | Whole organism |
| scientific_name | Leptosphaeria maculans |
| scientific_name_authorship | (Desmazières) Cesati & de Notaris |
| scientific_name_note | Plenodomus lingam |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Revio SPRQ sequencing plate |
| sequencing_model | PacBio Revio |
| sequencing_platform | PACBIO_SMRT |
| species | maculans |
| specimen_custodian | University of Melbourne |
| specimen_id | JN3 |
| specimen_id_description | IBCN095/v23.1.3 |
| state_or_region | in vitro cross |
| taxon_id | 985895 |
| taxonomic_group | Fungi |
| ticket | BPAOPS-1919 |
| tissue | Ascospore |
| tissue_preservation | Freeze dried |
| tissue_preservation_temperature | Room temperature |
| wild_captive | In vitro cross |
| work_order | 5223 |