Plant Pathogen, Genomics, Illumina Shortread, Sample ID 396208
Dataset size is: 0.00 Bit
This dataset is currently under a short embargo period until October 20, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:pp-prj052 |
| Access Control Date | 2026-10-20 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysis_software | NovaSeq X Control Software v1.3.1.59007; Real Time Analysis v4.29.3; Dragen BCL Convert vt 07.031.732.4.3.6 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/pp_staging/illumina-shortread/BPAOPS-1929/20251020_PP_AGRF_CAGRF25070161_2377M2LT4/ |
| bioplatforms_dataset_id | 102.100.100/399081 |
| bioplatforms_library_id | 102.100.100/398619 |
| bioplatforms_project | Plant Pathogen Initiative |
| bioplatforms_project_code | PP052_Norfolkv |
| bioplatforms_sample_id | 102.100.100/396208 |
| ccg_jira_ticket | BPAOPS-1929 |
| class | Unknown |
| collection_date | 2013-10-11 |
| collection_permit | IP13007705 |
| collector | John Thomas, Andrew Geering |
| country | Australia |
| data_context | Genomics |
| data_type | Short read |
| date_data_published | 23/10/2025 |
| date_of_transfer | 2025-10-20 |
| date_of_transfer_to_archive | 2025-10-23 |
| decimal_latitude_public | -27.524 |
| decimal_longitude_public | 153.25 |
| description | Illumina Short read |
| download | https://data.bioplatforms.com/dataset/?q=ticket:BPAOPS-1929 |
| facility | AGRF |
| facility_project_code | CAGRF25070161 |
| facility_sample_id | 20901-35 |
| family | Unknown |
| flowcell_id | 2377M2LT4 |
| flowcell_type | 10B-300 |
| folder_name | 20251020_PP_AGRF_CAGRF25070161_2377M2LT4 |
| genus | Unknown |
| host_common_name | Rhubarb |
| host_family | Polygonaceae |
| host_organ | Leaf |
| host_scientific_name | Rheum × hybridum |
| host_status | Cultivated |
| host_symptom | Mosaic |
| insert_size_range | 347.0 |
| library_construction_protocol | TruSeq Ribo-Zero (PLANT) |
| library_id | 398619 |
| library_index_id_dual | UDI0075-F & UDI0075-R |
| library_index_seq_dual | AGTACTCC-AACCTGTT |
| library_location | AGRF Melbourne |
| library_ng_ul | 3.92 |
| library_pcr_cycles | 13 |
| library_prep_date | 2025-09-27 |
| library_prepared_by | JM |
| library_source | RNA |
| library_type | illumina-shortread |
| location_info_restricted | No |
| material_extracted_by | John Thomas |
| material_extraction_date | 2025-06-30 |
| material_extraction_method | Trizol/Ambion PureLink RNA mini kit |
| material_extraction_type | gRNA |
| metadata_revision_date | 2025-11-19 |
| metadata_revision_filename | 2025-11-14_Combined_Plant_Pathogen_sample_metadata_forQCIF_removelatlong.xlsx |
| order | Unknown |
| phylum | Unknown |
| project_lead | Andrew Geering | University of Queensland |
| sample_collection_type | Herbarium |
| sample_custodian | Andrew Geering | University of Queensland (QAAFI), Paul Campbell | Qld Department of Primary Industries |
| sample_quality | Good |
| sample_type | Dried leaf tissue from a single plant |
| scientific_name | Unknown virus (Dried leaf tissue from a single plant) |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | XLEAP SBS |
| sequencing_model | X Plus |
| sequencing_platform | NovaSeq |
| species | Unknown |
| specimen_custodian | University of Queensland (QAAFI), Qld Department of Primary Industries |
| specimen_id | Q4947 |
| specimen_id_description | QDPI Plant Virus Collection |
| state_or_region | Norfolk Island |
| sub_species | Unknown |
| taxonomic_group | Virus |
| ticket | BPAOPS-1929 |
| tissue_preservation | Siica gel then lyophilised |
| tissue_preservation_temperature | -20°C |
| wild_captive | Cultivated |