Plant Pathogen, Genomics, Illumina Shortread, Sample ID 395716
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This dataset is currently under a short embargo period until September 8, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:pp-prj028 |
| Access Control Date | 2026-09-08 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysis_software | 4.1.23 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/pp_staging/illumina-shortread/BPAOPS-1898/20250908_PP_BRF_WO20046_22F3JKLT1/ |
| bioplatforms_dataset_id | 102.100.100/399046 |
| bioplatforms_library_id | 102.100.100/397975 |
| bioplatforms_project | Plant Pathogen Initiative |
| bioplatforms_project_code | PP028_L_maculans |
| bioplatforms_sample_id | 102.100.100/395716 |
| ccg_jira_ticket | BPAOPS-1898 |
| class | Dothideomycetes |
| collection_method | Ascospore |
| collection_permit | N/A |
| collector | Phil Salisbury |
| collector_sample_id | M1/D5/IBCN18 |
| common_name | Blackleg |
| country | Australia |
| data_context | Genomics |
| data_type | Hi-C |
| date_data_published | 8/9/2025 |
| date_of_transfer | 2025-09-08 |
| date_of_transfer_to_archive | 2025-09-08 |
| description | Illumina short read (Hi-C) |
| dna_treatment | FA crosslinking |
| download | https://data.bioplatforms.com/dataset/?ext_search_by=&q=ticket%3ABPAOPS-1898 |
| facility | BRF |
| facility_project_code | NA |
| facility_sample_id | 395716_397975_PP_BRF_22F3JKLT1_ATGACGAA-TGAGGAGT |
| family | Leptosphaeriaceae |
| flowcell_id | 22F3JKLT1 |
| flowcell_type | NovaSeq X 1.5B |
| folder_name | 20250908_PP_BRF_WO20046_22F3JKLT1 |
| genus | Leptosphaeria |
| host_common_name | Canola |
| host_family | Brassicaceae |
| host_organ | Stubble |
| host_scientific_name | Brassica napus |
| host_status | Commercial cultivar |
| host_symptom | Crown internal infection |
| insert_size_range | ~600bp |
| library_construction_protocol | HiC |
| library_id | 397975 |
| library_index_id | Arima_50_B07 |
| library_index_id_dual | Arima_50_B07 |
| library_index_seq_dual | TGAGGAGT |
| library_index_sequence | ATGACGAA |
| library_layout | Paired end |
| library_location | BRF Freezer |
| library_ng_ul | 1.0 |
| library_oligo_sequence | CAAGCAGAAGACGGCATACGAGATatgacgaaCTGTCTCTTATACACATCTCCGAGCCCACGAGAC |
| library_oligo_sequence_dual | AATGATACGGCGACCACCGAGATCTACACtgaggagtTCGTCGGCAGCGTCAGATGTGTATAAGAGACAG |
| library_pcr_cycles | 8 |
| library_pcr_reps | 1 |
| library_prepared_by | Max Nekrasov |
| library_selection | Restriction digest |
| library_source | GENOMIC |
| library_type | Illumina-HiC |
| life_stage | Ascospore |
| location_text | Penshurst |
| material_extracted_by | Camilla Langlands-Perry |
| material_extraction_date | 2024-07-01 |
| material_extraction_method | In vitro culture |
| material_extraction_type | Mycelia |
| metadata_revision_date | 2025-11-19 |
| metadata_revision_filename | 2025-11-14_Combined_Plant_Pathogen_sample_metadata_forQCIF_removelatlong.xlsx |
| n_libraries_pooled | 1.0 |
| order | Pleosporales |
| phylum | Ascomycota |
| project_lead | Angela van de Wouw | Alexander Idnurm | University of Melbourne |
| sample_collection_type | University |
| sample_custodian | Angela van de Wouw | Alexander Idnurm | University of Melbourne |
| sample_type | Whole organism |
| scientific_name | Leptosphaeria maculans |
| scientific_name_authorship | (Desmazières) Cesati & de Notaris |
| scientific_name_note | Plenodomus lingam |
| sequencing_facility | Biomolecular Resource Facility |
| sequencing_kit_chemistry_version | DRAGEN BCLConvert |
| sequencing_model | HiC Arima 2.0 |
| sequencing_platform | NovaSeq X |
| species | maculans |
| specimen_custodian | University of Melbourne |
| specimen_id | D5 |
| specimen_id_description | IBCN18 |
| state_or_region | South Australia |
| taxon_id | 985895 |
| taxonomic_group | Fungi |
| ticket | BPAOPS-1898 |
| tissue | Ascospore |
| tissue_preservation | Stored on dry cellulose filter discs |
| tissue_preservation_temperature | Room temperature |
| wild_captive | Field |
| work_order | WO20046 |