Grasslands PacBio-HiFi, Reference genomes, Sample ID 369564
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:grassland-consortium-members |
| Access Control Date | 2025-12-31 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| Related Data | PacBio-HiFi |
| analysis_software | 13.0.0.208615 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/grasslands/pacbio-hifi/BPAOPS-1547/20231208_AG_BRF_m84118_231208_115614_s4/ |
| bioplatforms_project | Australian Grasslands Initiative (AG) |
| cell_postion | 1_D01 |
| collected_by | Rachael Gallagher |
| collection_date | 2021-06-16 |
| common_name | Kangaroo grass |
| country | Australia |
| data_context | Reference genomes |
| data_type | Main dataset |
| dataset_id | 102.100.100/373564 |
| dataset_url | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1547 |
| date_data_published | 04/01/2024 |
| date_of_transfer | 2023-12-20 |
| date_of_transfer_to_archive | 2023-12-22 |
| decimal_latitude_public | -33.39 |
| decimal_longitude_public | 151.33 |
| description | PacBio-HiFi |
| dna_treatment | Blue pippin size selection during library prep |
| facility | BRF |
| facility_sample_id | PacBio_WGS16_591_lib |
| family | Poaceae |
| fast5_compression | NA |
| flowcell_id | m84118_231208_115614_s4 |
| flowcell_type | Revio SMRT Cells |
| folder_name | 20231208_AG_BRF_m84118_231208_115614_s4 |
| growth_facility | Macquarie University Plant Growth facility |
| id_vetting_by | Karen |
| initiative_prefix | Grasslands |
| insert_size_range | 19182.0 |
| latitude | -33.39 |
| library_construction_protocol | SMRTbell® prep kit 3.0 |
| library_id | 102.100.100/371564 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq | NA |
| library_index_seq_dual | NA |
| library_layout | NA |
| library_location | BRF fridge 0214 |
| library_ng_ul | 59.5 |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_date | 2023-12-08 |
| library_prepared_by | Carolina Correa-Ospina |
| library_selection | RANDOM |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | HiFi |
| location_id | Narara |
| longitude | 151.33 |
| metadata_revision_date | 2024-12-16 |
| metadata_revision_filename | Australian_grasslands_metadata_combined_2024-12-12_forQCIF.xlsx |
| model_base_caller | NA |
| movie_length | 30h |
| n_libraries_pooled | NA |
| plant_developmental_stage | Floret emergence |
| plant_growth_medium | Standard MQ loam |
| ploidy | 2n |
| project_aim | Reference genomes |
| sample_id | 102.100.100/369564 |
| sample_replicate | NA |
| sample_submitter_name | Ashley Jones |
| scientific_name | Themeda triandra |
| scientific_name_authorship | Forssk |
| sequencing_facility | Biomolecular Resource Facility |
| sequencing_kit_chemistry_version | SMRT Link |
| sequencing_model | Revio |
| sequencing_platform | PACBIO |
| state_or_territory | NSW |
| taxon_id | 106636 |
| team_lead_email | brian.atwell@mq.edu.au |
| team_lead_name | Brian Atwell |
| ticket | BPAOPS-1547 |