Grasslands Illumina short read, Reference genomes, Sample ID 369598
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:grassland-consortium-members |
| Access Control Date | 2025-12-13 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| accession_number_seed | APG 65490 |
| analysis_software | NovaSeq X Control Software v1.2.2.48004; Real Time Analysis v4.6.7; Dragen BCL Convert v07.021.645.4.0.3 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/grasslands/illumina-shortread/BPAOPS-1732/20241213_AG_AGRF_CAGRF24050423_2_22VGHFLT3/ |
| bioplatforms_project | Australian Grasslands Initiative (AG) |
| ccg_jira_ticket | BPAOPS-1732 |
| collected_by | Tasmanian Institute of Agricultural Science |
| common_name | Kangaroo grass |
| country | Australia |
| data_type | Main dataset |
| dataset_id | 373575 |
| date_of_transfer | 2024-12-13 |
| date_of_transfer_to_archive | 2024-12-16 |
| decimal_latitude_public | -41.646172 |
| decimal_longitude_public | 147.328764 |
| description | Illumina short read |
| facility | AGRF |
| facility_project_code | CAGRF24050423-2 |
| facility_sample_id | 17935-1 |
| family | Poaceae |
| flowcell_id | 22VGHFLT3 |
| flowcell_type | 10B-300 |
| folder_name | 20241213_AG_AGRF_CAGRF24050423_2_22VGHFLT3 |
| growth_facility | University of Tasmania Glasshouses |
| initiative_prefix | Grasslands |
| insert_size_range | 593.0 |
| latitude | -41.646172 |
| library_construction_protocol | Illumina DNA PCR-Free |
| library_id | 371847 |
| library_index_seq_dual | UDP0001-F & UDP0001-R |
| library_layout | Paired-End |
| library_location | AGRF Melbourne |
| library_ng_ul | 6.33 |
| library_oligo_sequence_dual | GAACTGAGCG-TCGTGGAGCG |
| library_prep_date | 2024-11-26 |
| library_prepared_by | EB |
| library_source | DNA |
| library_strategy | Whole-genome Sequencing |
| library_type | WGS |
| location_id | Nile |
| longitude | 147.328764 |
| metadata_revision_date | 2024-12-16 |
| metadata_revision_filename | Australian_grasslands_metadata_combined_2024-12-12_forQCIF.xlsx |
| plant_developmental_stage | Vegetative |
| plant_growth_medium | Soil & Potting Mix |
| plant_structure | Tussock Grass |
| ploidy | 2n |
| preservation_storage_location | University of Tasmania |
| preservation_temperature | -80°C |
| preservation_type | stored in nuclease free water |
| project_aim | Reference genomes |
| sample_id | 102.100.100/369598 |
| sample_material_preparation_process | CTAB extraction with RNAse treatment |
| sample_material_preparation_type | DNA |
| sample_material_prepared_by | Jazmine Humphreys | Alejandro Correa Lozano | University of Tasmania |
| scientific_name | Themeda triandra |
| scientific_name_authorship | Forssk |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | XLEAP SBS |
| sequencing_model | X Plus |
| sequencing_platform | NovaSeq |
| state_or_territory | TAS |
| taxon_id | 106636 |
| team_lead_email | brian.atwell@mq.edu.au |
| team_lead_name | Brian Atwell |
| ticket | BPAOPS-1732 |