Grasslands Illumina Short Read, Transcriptomics-RNASeq, Sample ID 369627

Kangaroo grass, Themeda triandra, Poaceae, Location ID Jindabyne, Brian Atwell

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Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:365:grassland-consortium-members
Access Control Date 2025-02-01
Access Control Mode date
Sequence Data Type illumina-shortread
accession_number_seed ?
analysis_software BCL Convert v4.1.7
base_url https://downloads-qcif.bioplatforms.com/bpa/grasslands/illumina-shortread/BPAOPS-1555/20240129_AG_UNSW_22HYWKLT3/
bioplatforms_project Australian Grasslands Initiative (AG)
ccg_jira_ticket BPAOPS-1555
collected_by Brian Atwell
common_name Kangaroo grass
country Australia
data_context Transcriptomics
data_type Main dataset
dataset_id 373569
date_data_published 13/02/2024
date_of_transfer 2024-02-02
date_of_transfer_to_archive 2024-02-06
decimal_latitude_public -36.43796199
decimal_longitude_public 148.6222921
description Illumina Short Read
download https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1555
experimental_notes Replicate-a
facility RAMAC
facility_sample_id ATW12889A61
family Poaceae
flowcell_id 22HYWKLT3
flowcell_type 10B 200c
folder_name 20240129_AG_UNSW_22HYWKLT3
growth_condition High_Temperature
growth_facility Macquarie University Glasshouses
initiative_prefix Grasslands
insert_size_range 100 PE
latitude -36.43796199
library_construction_protocol Illumina TruSeq
library_id 371629
library_index_id UDI0061
library_index_id_dual UDI0061E08
library_index_seq CGGAACTG
library_index_seq_dual TCGTAGTG
library_layout Paired-end
library_location RAMACIOTTI
library_ng_ul 12.4
library_pcr_cycles 11
library_pcr_reps 1
library_prep_date 2024-01-11
library_prepared_by RAMACIOTTI
library_source RNA
library_strategy Illumina TruSeq Total RNA
library_type RNA
location_id Jindabyne
longitude 148.6222921
metadata_revision_date 2024-12-16
metadata_revision_filename Australian_grasslands_metadata_combined_2024-12-12_forQCIF.xlsx
n_libraries_pooled 89
plant_developmental_stage Vegetative
plant_growth_medium Soil & Potting Mix
plant_structure Tussock Grass
preservation_date_begin 2023-04-20
preservation_storage_location Macquarie University
preservation_temperature -80°C
project_aim Transcriptomics-RNASeq
sample_id 102.100.100/369627
sample_material_associated_references Bioline-BIO-52073
sample_material_preparation_date 2023-04-20
sample_material_preparation_process BIO-52073 RNA extraction kit
sample_material_preparation_type RNA
sample_material_prepared_by Jazmine Humphreys | Vinod Jacob | Alejandro Correa Lozano | Macquarie University
sample_replicate 1.0
scientific_name Themeda triandra
scientific_name_authorship Forssk
sequencing_facility Ramaciotti
sequencing_kit_chemistry_version NovaSeq X v1.0
sequencing_model X Plus
sequencing_platform NovaSeq
state_or_territory NSW
taxon_id 106636
team_lead_email brian.atwell@mq.edu.au
team_lead_name Brian Atwell
ticket BPAOPS-1555