GAP PacBio-HiFi, Reference genomes, 376315

Xanthorrhoea johnsonii A.T.Lee, Asphodelacaeceae, Todd McLay | Ash Jones

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Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:365:gap-consortium-members
Access Control Date 2022-10-01
Access Control Mode date
Sequence Data Type pacbio-hifi
analysis_software SMRT Link
analysis_software_version 10.1.0.119588
bait_set_reference not applicable
base_url https://downloads-qcif.bioplatforms.com/bpa/plants_staging/pacbio-hifi/BPAOPS-1139/20210909_GAP_GWA_AJ-236_DA110323/
cell_postion Cell4
country Australia
data_type Main dataset
dataset_id 102.100.100/83712
dataset_url https://data.bioplatforms.com/dataset/bpa-gap-pacbio-hifi-382897-da110323
date_data_published 11/10/2021
date_of_transfer 2021-10-01
date_of_transfer_to_archive 2021-10-04
description PacBio-HiFi
dna_treatment Shearing on Diagenode megaruptor-3, FFPE repair with NEB kit, Blue Pippin fize selection > 15kB before library preparation
facility GWA
facility_sample_id iLab ID GWA-AJ-236 XJ L74&L91 PBS007
family Asphodelacaeceae
flowcell_id DA110323
flowcell_type 8M SMRT cell
folder_name 20210909_GAP_GWA_GWA-AJ-236_DA110323
genomic_material_associated_references In the protocol
genomic_material_preparation_date 2020-12-11
genomic_material_preparation_process HMW DNA Prep https://www.protocols.io/view/scalable-high-molecular-weight-dna-extraction-for-bnjhmcj6
genomic_material_preparation_type Leaf gDNA
genomic_material_prepared_by Ashley Jones
herbarium_code CBG
id_vetting_by Todd McLay
id_vetting_date 2020-12-01
insert_size_range 21935 bp
library_construction_protocol HiFi SMRTbell® Libraries using the SMRTbell Express Template Prep Kit 2.0 primer V5 PN 101-853-100 Version 04 (April 2021)
library_id 102.100.100/382897
library_layout NA
library_location No library left
library_ng_ul 75.2
library_prep_date 2021-09-03
library_prepared_by Hadi Shamaileh
library_selection RANDOM
library_source GENOMIC
library_status Library Sequenced
library_strategy WGS
library_type Long read Hi Fi library with custom steps
living_collections_catalog_number CBG 8311086.1
living_collections_event_date 2020-12-01
living_collections_material_sample_rna not applicable
living_collections_record_number TM350
living_collections_recorded_by R. Hallett
location_id Australian National Botanic Gardens, Canberra, ACT, Section 15f
metadata_revision_date 2025-10-14
metadata_revision_filename 2025-10-15_Combined_plant_sample_metadata_forQCIF.xlsx
movie_length 30 hours
nagoya_protocol_compliance Yes
nagoya_protocol_permit_number DNP Reference: 2020/21-1
preservation_date_begin 2020-12-01
preservation_temperature Leaf −80°C (2020-12-01) | DNA 4°C (2020-12-11)
preservation_type Freezing, fridge
project_aim Reference genomes
sample_id 102.100.100/376315
sample_submission_date 2021-06-18
sample_submitter_email todd.McLay@rbg.vic.gov.au | ashley.jones@anu.edu.au
sample_submitter_name Todd McLay | Ash Jones
scientific_name Xanthorrhoea johnsonii
scientific_name_authorship A.T.Lee
scientific_name_notes NA
sequencing_facility Genomics WA
sequencing_model PacBio Sequel II
sequencing_platform PACBIO_SMRT
state_or_territory ACT
ticket BPAOPS-1139
voucher_herbarium_catalog_number 8900857
voucher_herbarium_collector_id R. Hallett
voucher_herbarium_event_date 1988-12-14
voucher_herbarium_record_number Hallett 22
voucher_herbarium_recorded_by R. Hallett