Forest Resilience PacBio-HiFi, Reference genome, Library ID: 645249
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Data and Resources
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:forest-resilience-consortium-members |
| Access Control Date | 2026-03-27 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| analysis_software | SMRTLink 25.1.0.257715 |
| bait_set_name | RANDOM |
| bait_set_reference | GENOMIC |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/forest_staging/pacbio-hifi/BPAOPS-1766/20250322_FOR_BRF_m84118_250322_010010_s1/ |
| bioplatforms_dataset_id | 102.100.100/647499 |
| bioplatforms_library_id | 102.100.100/645249 |
| bioplatforms_project | Forest Resilience |
| bioplatforms_sample_id | 102.100.100/642999 |
| ccg_jira_ticket | BPAOPS-1766 |
| cell_postion | 1_B01 |
| class | Magnoliopsida |
| collection_date | 2024-12-04 |
| collection_method | Sampled |
| collection_permit | Botanic Gardens of Sydney |
| collector | E. Lord |
| common_name | Red Cedar |
| country | Australia |
| dataset_id | 647499 |
| dataset_url | https://data.bioplatforms.com/dataset/?ext_search_by=&q=ticket%3ABPAOPS-1766 |
| date_data_published | 2025-04-08 |
| date_of_transfer | 2025-03-27 |
| date_of_transfer_to_archive | 2025-04-01 |
| description | PacBio-HiFi |
| dna_treatment | Pippin size selection and shearing |
| download | https://data.bioplatforms.com/dataset/?ext_search_by=&q=ticket%3ABPAOPS-1766 |
| facility | BRF |
| facility_sample_id | 876-2 |
| family | Meliaceae |
| flowcell_id | m84118_250322_010010_s1 |
| flowcell_type | Revio SMRT Cells 25M |
| folder_name | 20250322_FOR_BRF_m84118_250322_010010_s1 |
| genus | Toona |
| health_state | healthy |
| identified_by | Botanic Gardens of Sydney |
| indigenous_location | Gadigal |
| insert_size_range | 15848.0 |
| library_comments | multiplexed with another sample for FOR |
| library_construction_protocol | SMRTbell® prep kit 3.0 |
| library_id | 645249 |
| library_index_id_dual | bc2012 |
| library_index_seq_dual | TCGTACTACTGAGTAT |
| library_layout | NA |
| library_location | BRF labs |
| library_ng_ul | 36.3 |
| library_prep_date | 2025-03-19 |
| library_prepared_by | Ziyan Zhang |
| library_selection | Pippin size slection, shearing and HiFi prep |
| library_source | Extracted DNA |
| library_strategy | WGS |
| library_type | HiFi |
| life_stage | mature plant |
| location_text | Botanic Gardens of Sydney Bed 9 |
| material_conc_ng_ul | 800.0 |
| material_extracted_by | ReCER |
| material_extraction_date | 2025-01-22 |
| material_extraction_method | CTAB (Lu-Irving, Rutherford 2021) |
| material_extraction_type | gDNA |
| metadata_revision_date | 2025-05-18 |
| metadata_revision_filename | 2025-04-17_Combined_Forest_sample_metadata_forQCIF.xlsx |
| movie_length | 30.0 |
| n_libraries_pooled | 2 |
| order | Sapindales |
| phylum | Streptophyta |
| project_aim | Reference genome |
| sample_collection_type | Living collection |
| sample_custodian | Botanic Gardens of Sydney |
| sample_id | toona_ciliata |
| sample_quality | excellent |
| sample_submitter_email | edana.lord@botanicgardens.nsw.gov.au |
| sample_submitter_name | Edana Lord |
| sample_type | whole organism |
| scientific_name | Toona ciliata |
| scientific_name_authorship | M.Roem., 1846 |
| scientific_name_note | NA |
| sequencing_facility | Biomolecular Resource Facility |
| sequencing_kit_chemistry_version | SPRQ |
| sequencing_model | Revio |
| sequencing_platform | PacBio |
| source_population | NA |
| species | ciliata |
| specimen_custodian | Botanic Gardens of Sydney |
| specimen_id | 15281/2 |
| specimen_id_description | Botanic Gardens of Sydney |
| state_or_region | New South Wales |
| sub_species | NA |
| taxon_id | 67918 |
| taxonomic_group | Plant |
| ticket | BPAOPS-1766 |
| tissue | leaf |
| tissue_preservation | frozen |
| tissue_preservation_temperature | -80.0 |
| wild_captive | unknown |