Indian Backwater Oyster, Reference genome, PacBio-HiFi, gill
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Data and Resources
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:cipps005 |
| Access Control Date | 2025-06-04 |
| Access Control Mode | date |
| Sequence Data Type | PacBio-HiFi |
| ala_specimen_url | https://bie.ala.org.au/species/https://biodiversity.org.au/afd/taxa/cd2cabb8-0364-49e7-81b1-5e48c3e264dd |
| analysis_software | SMRT Link Analysis |
| analysis_software_version | 13.1.0.221970 |
| ancillary_notes | NA |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/cipps_staging/pacbio-hifi/BPAOPS-1594/20240603_CIPPS_AGRF_CAGRF24040033_m84073_240503_110849_s4/ |
| bioplatforms_library_id | 102.100.100/417523 |
| bioplatforms_project_code | CIPPS_oyster |
| bioplatforms_sample_id | 102.100.100/415521 |
| cell_postion | D01 |
| class | Bivalvua |
| collection_date | 2024-02-24 |
| collector | Joy Becker |
| common_name | Indian Backwater Oyster |
| country | Sri Lanka |
| data_context | Reference genome |
| data_custodian | Joy Becker |
| date_of_transfer | 2024-06-04 |
| date_of_transfer_to_archive | 2024-06-05 |
| dna_treatment | SHEARING |
| experimental_design | NA |
| facility_project_code | CAGRF24040033 |
| facility_sample_id | 415521.0 |
| family | Ostreidae |
| file_type | BAM |
| flowcell_id | m84073_240503_110849_s4 |
| flowcell_type | SMRT Cell 25M |
| genotypic_sex | not determined |
| genus | Crassostrea |
| health_state | unknown |
| insert_size_range | 9500.0 |
| institution_name | The university of Sydney |
| library_comments | NA |
| library_construction_protocol | Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 2.0 |
| library_index_id | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 250pM |
| library_oligo_sequence | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_date | 2024-04-02 |
| library_prepared_by | Trent Peters |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| material_conc_ng_ul | 293.0 |
| material_extracted_by | Luke Silver |
| material_extraction_date | 2024-03-27 |
| material_extraction_method | Circulomics |
| material_extraction_type | DNA |
| metadata_revision_date | 2025-08-06 |
| metadata_revision_filename | 20250806_CIPPS_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| movie_length | 30Hrs |
| n_libraries_pooled | 1.0 |
| order | Ostreoida |
| phenotypic_sex | not determined |
| phylum | Mollusca |
| prior_genetics | NA |
| sample_custodian | Joy Becker |
| scientific_name | Crassostrea bilineata |
| scientific_name_authorship | NA |
| scientific_name_note | NA |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Revio sequencing plate |
| sequencing_model | PacBio Revio |
| sequencing_platform | PACBIO_SMRT |
| species | bilineata |
| specimen_id | 1-2GLB1 |
| specimen_id_description | gill |
| subspecies | NA |
| taxonomic_group | Mollusk |
| ticket | BPAOPS-1594 |
| tissue_number | 1-2_GillB1 |
| tissue_preservation_temperature | ethanol |
| tissue_type | gill |
| wild_captive | Wild |
| work_order | CIPPS |