Koala, Pangenome, PacBio-HiFi
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Data and Resources
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:cipps001 |
| Access Control Date | 2025-06-04 |
| Access Control Mode | date |
| Sequence Data Type | PacBio-HiFi |
| analysis_software | SMRT Link Analysis |
| analysis_software_version | 13.1.0.221970 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/cipps_staging/pacbio-hifi/BPAOPS-1595/20240603_CIPPS_AGRF_CAGRF23101329_m84073_240507_074735_s2/ |
| bioplatforms_dataset_id | 102.100.100/419487 |
| bioplatforms_library_id | 102.100.100/417521 |
| bioplatforms_project_code | CIPPS_koala |
| bioplatforms_sample_id | 102.100.100/415519 |
| cell_postion | D01 |
| class | Mammalia |
| common_name | Koala |
| country | Australia |
| data_context | Pangenome |
| data_custodian | Carolyn Hogg |
| date_of_transfer | 2024-06-04 |
| date_of_transfer_to_archive | 2024-06-05 |
| dna_treatment | SHEARING |
| experimental_design | NA |
| facility_sample_id | 415519.0 |
| family | Phascolarctidae |
| file_type | BAM |
| flowcell_id | m84073_240507_074735_s2 |
| flowcell_type | SMRT Cell 25M |
| genus | Phascolarctos |
| insert_size_range | 6000.0 |
| institution_name | University of Sydney |
| library_comments | NA |
| library_construction_protocol | Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 2.0 |
| library_index_id | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 250pM |
| library_oligo_sequence | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_date | 2024-04-02 |
| library_prepared_by | Trent Peters |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| metadata_revision_date | 2025-08-06 |
| metadata_revision_filename | 20250806_CIPPS_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| movie_length | 30Hrs |
| n_libraries_pooled | 2.0 |
| order | Diprotodontia |
| phylum | Chordata |
| scientific_name | Phascolarctos cinereus |
| scientific_name_authorship | NA |
| scientific_name_note | NA |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Revio sequencing plate |
| sequencing_model | PacBio Revio |
| sequencing_platform | PACBIO_SMRT |
| species | cinereus |
| specimen_id | 129414_Nuttsy |
| subspecies | NA |
| taxon_id | 38625.0 |
| taxonomic_group | Mammal |
| ticket | BPAOPS-1595 |
| tissue_number | USYD_129414_Nuttsy |
| work_order | CAGRF23101329 |