Reference genome
Dataset size is: 0.00 Bit
This dataset is currently under a short embargo period until July 16, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:cipps009 |
| Access Control Date | 2026-07-16 |
| Access Control Mode | date |
| Sequence Data Type | illumina-transcriptomics |
| analysis_software | BCLConvert |
| analysis_software_version | 4.3.6 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/cipps_staging/illumina-shortread/BPAOPS-1831/20250709_CIPPS_UNSW_225FMNLT1/ |
| bioplatforms_dataset_id | 102.100.100/629197 |
| bioplatforms_library_id | 102.100.100/681824 |
| bioplatforms_project | CIPPS |
| bioplatforms_project_code | CIPPS_wsturtle |
| bioplatforms_sample_id | 102.100.100/669839 |
| data_context | Reference genome |
| data_custodian | Carolyn Hogg |
| date_of_transfer | 2025-07-16 |
| date_of_transfer_to_archive | 2025-07-17 |
| dna_treatment | N/A |
| facility_project_code | Q0017450 |
| facility_sample_id | SIL15471A11 |
| file_type | fastq.gz |
| flowcell_id | 225FMNLT1 |
| flowcell_type | 1.5B 200c |
| genus | Pseudemydura |
| insert_size_range | 100bp PE |
| library_construction_protocol | Illumina Stranded mRNA Prep Ligation |
| library_id | 681824 |
| library_index_id | UDP0048 |
| library_index_seq_dual | CAGTGGCACT-TAACAATAGG |
| library_index_sequence | CAGTGGCACT-TAACAATAGG |
| library_layout | Paired-end |
| library_location | Ramaciotti Centre for Genomics |
| library_ng_ul | 1.33 |
| library_pcr_cycles | 11 |
| library_pcr_reps | 1 |
| library_prep_date | 2025-06-13 |
| library_prepared_by | Ramaciotti Centre for Genomics |
| library_selection | PolyA |
| library_source | TRANSCRIPTOMIC |
| library_strategy | RNA-Seq |
| library_type | Illumina-transcriptomics |
| metadata_revision_date | 2025-08-06 |
| metadata_revision_filename | 20250806_CIPPS_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| n_libraries_pooled | 16.0 |
| scientific_name | Pseudemydura umbrina |
| sequencing_facility | Ramaciotti Centre for Genomics |
| sequencing_kit_chemistry_version | NovaSeq X v1.0 |
| sequencing_model | Illumina NovaSeq X Plus |
| sequencing_platform | ILLUMINA |
| species | umbrina |
| specimen_id | C40075 |
| ticket | BPAOPS-1831 |
| tissue_number | C40075_brain |
| work_order | 26007 |