Baudin's white-tailed black cockatoo, Reference genome, PacBio-HiFi, Kidney
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This dataset is currently under a short embargo period until September 5, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:aus-avian-consortium-members |
| Access Control Date | 2026-09-05 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| analysis_software | SMRT Link Analysis 13.3.0.253824 |
| associated_media | none |
| bait_set_name | NA |
| bait_set_reference | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/avian_staging/pacbio-hifi/BPAOPS-1894/20250905_AVIAN_AGRF_CAGRF25070010_m84073_250826_133304_s2/ |
| bioplatforms_dataset_id | 102.100.100/613545 |
| bioplatforms_library_id | 102.100.100/612151 |
| bioplatforms_project | Australian Avian Genomics Initiative |
| bioplatforms_sample_id | 102.100.100/610142 |
| cell_postion | B01 |
| class | Aves |
| collection_date | 2025-05-08 |
| collection_method | injured animal taken into rehabilitation |
| collector | Perth Zoo |
| common_name | Baudin's white-tailed black cockatoo |
| country | Australia |
| data_context | Reference genome |
| data_type | PacBio-HiFi |
| date_of_transfer | 2025-09-05 |
| date_of_transfer_to_archive | 2025-09-05 |
| death_date | 2025-05-07 |
| dna_treatment | SHEARING |
| experimental_design | PacBio HiFi, long reads |
| facility_project_code | CAGRF25070010 |
| facility_sample_id | 612151.0 |
| family | Cacatuidae |
| fast5_compression | NA |
| flowcell_id | m84073_250826_133304_s2 |
| flowcell_type | SMRT Cell 25M |
| folder_name | 20250905_AVIAN_AGRF_CAGRF25070010_m84073_250826_133304_s2 |
| genus | Zanda |
| health_state | Found on the side of the road – presumed hit by car on 4th May 2025. Severe neurological trauma, depressed, unco-ordinated. |
| identified_by | Perth Zoo |
| indigenous_location | Noongar |
| insert_size_range | 12000.0 |
| library_comments | NA |
| library_construction_protocol | Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 3.0 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 325pM |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_date | 2025-07-19 |
| library_prepared_by | Lucas Trevisan |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| lifestage | adult organism |
| location_info_restricted | yes |
| location_text | Gidgeganup Road Reserve, Gidgeganup. |
| material_extracted_by | AGRF |
| metadata_revision_date | 2025-07-22 |
| metadata_revision_filename | 20250722_AVIAN_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_sex_determination | morphology and dissection |
| model_base_caller | NA |
| movie_length | 30Hrs |
| n_libraries_pooled | 2.0 |
| order | Psittaciformes |
| phenotypic_sex | female |
| phylum | Chordata |
| project_lead | Rowan Lymbery |
| sample_collection_type | Zoo living collection |
| sample_custodian | Kym Ottewell | DBCA |
| sample_id | T22527 |
| sample_id_description | DBCA_internal_identifier |
| sample_type | Tissue sample |
| scientific_name | Zanda baudinii |
| scientific_name_authorship | Lear, 1832 |
| scientific_name_note | NA |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Revio SPRQ sequencing plate |
| sequencing_model | PacBio Revio |
| sequencing_platform | PACBIO_SMRT |
| sex_certainty | certain |
| species | baudinii |
| specimen_custodian | Perth Zoo |
| specimen_id | B2505192 |
| specimen_id_description | Perth Zoo |
| state_or_region | Western Australia |
| sub_species | NA |
| taxon_id | 986099 |
| taxonomic_group | Bird |
| ticket | BPAOPS-1894 |
| tissue | Kidney |
| tissue_preservation | -80C |
| tissue_preservation_temperature | -80.0 |
| type_status | no |
| wild_captive | wild (injured animal in rehabilitation) |
| work_order | 26013 |