Scarlet Honeyeater, Scarlet Myzomela, Reference genome, PacBio-HiFi, Blood
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Data and Resources
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:aus-avian-consortium-members |
| Access Control Date | 2026-07-17 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| altitude | 50.0 |
| analysis_software | SMRT Link Analysis 13.3.0.253824 |
| associated_media | Photos available |
| bait_set_name | NA |
| bait_set_reference | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/avian_staging/pacbio-hifi/BPAOPS-1833/20250716_AVIAN_AGRF_CAGRF25060007_m84073_250712_145943_s4/ |
| bioplatforms_dataset_id | 102.100.100/613533 |
| bioplatforms_library_id | 102.100.100/611850 |
| bioplatforms_project | Australian Avian Genomics Initiative |
| bioplatforms_sample_id | 102.100.100/609843 |
| cell_postion | D01 |
| class | Aves |
| collection_date | 2025-05-26 |
| collection_method | Mist Net |
| collection_permit | ENV/03/25/AEC |
| collector | Will Goulding |
| collector_sample_id | 323.0 |
| common_name | Scarlet Honeyeater, Scarlet Myzomela |
| country | Australia |
| data_context | Reference genome |
| data_type | PacBio-HiFi |
| date_of_transfer | 2025-07-17 |
| date_of_transfer_to_archive | 2025-07-18 |
| decimal_latitude_public | -27.27 |
| decimal_longitude_public | 152.85 |
| dna_treatment | SHEARING |
| env_broad_scale | ENVO_01000175 |
| env_local_scale | subtropical woodland biome [ENVO_01000222] |
| experimental_design | PacBio HiFi, long reads |
| facility_project_code | CAGRF25060007 |
| facility_sample_id | 611850.0 |
| family | Melphagidae |
| fast5_compression | NA |
| flowcell_id | m84073_250712_145943_s4 |
| flowcell_type | SMRT Cell 25M |
| folder_name | 20250716_AVIAN_AGRF_CAGRF25060007_m84073_250712_145943_s4 |
| genotypic_sex | Female |
| genus | Myzomela |
| habitat | RE 12.12.12 |
| health_state | Healthy |
| identified_by | William Goulding, Griffith University |
| indigenous_location | Garumngar clan of the Jinibara people |
| insert_size_range | 17000.0 |
| latitude | -27.27 |
| library_comments | NA |
| library_construction_protocol | Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 3.0 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 325pM |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_date | 2025-06-19 |
| library_prepared_by | Lucas Trevisan |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| lifestage | Unknown |
| location_info_restricted | No |
| location_text | Gold Scrub Lane, North Pine Dam Nature Refuge, Lake Samsonvale |
| longitude | 152.85 |
| metadata_revision_date | 2025-07-22 |
| metadata_revision_filename | 20250722_AVIAN_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_sex_determination | Plumage and PCR Sex Primers |
| model_base_caller | NA |
| movie_length | 30Hrs |
| n_libraries_pooled | 1.0 |
| order | Passeriformes |
| phenotypic_sex | Female |
| phylum | Chordata |
| project_collaborators | William Goulding |
| project_lead | Sonya Clegg |
| sample_collection_type | private |
| sample_custodian | Sonya May Clegg |
| sample_id | 01C-76314, 323 |
| sample_id_description | ABBBS band, project sample number |
| sample_quality | Shoud be good. Collected on the 26 May, so five days old. Defrosted once for Sex determination PCR |
| sample_type | Tissue sample |
| scientific_name | Myzomela sanguinolenta |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Revio SPRQ sequencing plate |
| sequencing_model | PacBio Revio |
| sequencing_platform | PACBIO_SMRT |
| sex_certainty | Certain |
| source_population | Lake Samsonvale, SEQ |
| species | sanguinolenta |
| specimen_custodian | Sonya May Clegg |
| specimen_id | 01C-76314, Blood sample 323 |
| specimen_id_description | ABBBS band, project sample number |
| state_or_region | Queensland |
| taxon_id | 266325 |
| taxonomic_group | Bird |
| temperature | 28.0 |
| ticket | BPAOPS-1833 |
| tissue | Blood |
| tissue_preservation | 100% ETOH AND Frozen |
| tissue_preservation_temperature | -20.0 |
| wild_captive | wild |
| work_order | 26010 |