white-quilled rock pigeon, Reference genome, PacBio-HiFi, liver, heart, muscle
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Data Policy
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:aus-avian-consortium-members |
| Access Control Date | 2026-07-10 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| analysis_software | SMRTLink 25.1.0.257715 |
| bait_set_name | RANDOM |
| bait_set_reference | GENOMIC |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/avian_staging/pacbio-hifi/BPAOPS-1814/20250620_AVIAN_BRF_m84118_250620_062022_s3/ |
| bioplatforms_dataset_id | 102.100.100/613527 |
| bioplatforms_library_id | 102.100.100/611830 |
| bioplatforms_project | Australian Avian Genomics Initiative |
| bioplatforms_sample_id | 102.100.100/609830 |
| cell_postion | 1_D01 |
| class | Aves |
| collection_date | 2019-08-30 |
| collector | ANWC |
| common_name | white-quilled rock pigeon |
| country | Australia |
| data_context | Reference genome |
| data_type | PacBio-HiFi |
| date_of_transfer | 2025-07-10 |
| date_of_transfer_to_archive | 2025-07-11 |
| decimal_latitude_public | -14.8221 |
| decimal_longitude_public | 125.7102 |
| dna_treatment | Short read eliminator and shearing with Microlab Prep |
| experimental_design | PacBio HiFi, long reads |
| facility_project_code | PacBio_WGS44_939 |
| facility_sample_id | 939-11 |
| family | Columbidae |
| fast5_compression | bam |
| flowcell_id | m84118_250620_062022_s3 |
| flowcell_type | Revio SMRT Cells 25M |
| folder_name | 20250620_AVIAN_BRF_m84118_250620_062022_s3 |
| genus | Petrophassa |
| health_state | unknown |
| insert_size_range | 15698 |
| latitude | -14.8221 |
| library_comments | multiplexed with another samples from the Avian initiative |
| library_construction_protocol | SMRTbell® prep kit 3.0 |
| library_index_id_dual | bc2055 |
| library_index_seq_dual | CTCAGCATACGAGTAT |
| library_location | BRF labs |
| library_ng_ul | 16.96 |
| library_prep_date | 2025-06-12 |
| library_prepared_by | Xiangning Liu |
| library_selection | Short read eliminator |
| library_source | Extracted DNA |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| lifestage | unknown |
| location_text | Little Mertens Falls; ~0.8km west of Mitchell Falls camping area; Western Australia, Australia; -14.8221000000, 125.7102000000; LocID: 20245 |
| longitude | 125.7102 |
| material_extracted_by | CSIRO AGI |
| material_extraction_date | 2025-05-01 |
| material_extraction_type | HMW DNA |
| metadata_revision_date | 2025-07-22 |
| metadata_revision_filename | 20250722_AVIAN_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| movie_length | 30.0 |
| n_libraries_pooled | 2.0 |
| order | Columbiformes |
| phylum | Chordata |
| project_collaborators | Australian National Wildlife Collection (ANWC) |
| project_lead | Anna Kearns |
| sample_collection_type | museum |
| sample_custodian | ANWC |
| sample_id | G47418 |
| sample_id_description | ANWC Genetic Sample Number |
| sample_quality | unknown |
| sample_type | tissue sample |
| scientific_name | Petrophassa albipennis |
| scientific_name_authorship | Gould, 1841 |
| sequencing_facility | BRF |
| sequencing_kit_chemistry_version | SPRQ |
| sequencing_model | Revio |
| sequencing_platform | PacBio |
| species | albipennis |
| specimen_custodian | Australian National Wildlife Collection (ANWC) |
| specimen_id | B60419 |
| specimen_id_description | ANWC Specimen Registration Number |
| state_or_region | Western Australia |
| taxon_id | 444146 |
| taxonomic_group | Bird |
| ticket | BPAOPS-1814 |
| tissue | liver, heart, muscle |
| tissue_preservation | frozen |
| tissue_preservation_temperature | -80 |
| wild_captive | wild |
| work_order | 26004 |