Murray River turtle, Reference Genome, ONT-promethion, liver

Chelidae, Emydura macquarii, AA062704, turtle, Project Lead: Arthur Georges

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Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:10:ausarg-consortium-members
Access Control Date 2021-07-26
Access Control Mode date
Sequence Data Type ONT-promethion
analysis_software MinKNOW Core, Bream, Guppy
analysis_software_version MinKNOW Core 4.0.5, Bream 6.0.10, Guppy 4.0.11
base_url https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/promethion/BPAOPS-1112/20210714_PAG99323_AusARG_RamaciottiGarvan_350823/
class Reptilia
common_name Murray River turtle
data_context Reference Genome
data_custodian Arthur Georges
data_type ONT-promethion
dataset_id 102.100.100/351771
dataset_url these are 2 runs of the same thing
date_of_transfer 2021-07-16
date_of_transfer_to_archive 2021-07-17
description PromethION
experimental_design ONT PromethION
facility RamaciottiGarvan
facility_sample_id PBXP150375
family Chelidae
fast5_compression zlib
flowcell_id PAG99323
flowcell_type FLO-PRO002
folder_name 20210714_PAG99323_AusARG_RamaciottiGarvan_350823
genus Emydura
library_construction_protocol SQK-LSK110
library_id 102.100.100/350823
library_location Garvan Institute of Medical Research
library_prep_date 2021-06-28
library_prepared_by Jillian Hammond
library_source GENOMIC
library_strategy WGS
metadata_revision_date 2024-11-15
metadata_revision_filename AusARG_Metadata_master_QCIF_20241115_FORDATAPORTAL.xlsx
model_base_caller High-accuracy basecalling
order Testudines
phylum Chordata
project_aim Reference genome
sample_custodian Arthur Georges
sample_id 102.100.100/349814
sequencing_facility Ramaciotti/Garvan
sequencing_model PromethION
sequencing_platform OXFORD_NANOPORE
species macquarii
specimen_id AA062704
subspecies NA
taxon_id 90392
taxonomic_group turtle
ticket BPAOPS-1112
tissue_number AA062712
tissue_type liver
voucher_or_tissue_number AA062712