Ornate Burrowing Frog, Reference Genome, ONT-promethion, heart/muscle

Limnodynastidae, Platyplectrum ornatum, SCL_006, frog, Project Lead: Renee Catullo

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Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:10:ausarg-consortium-members
Access Control Date 2021-07-17
Access Control Mode date
Sequence Data Type ONT-promethion
access_rights No restrictions
ala_specimen_url NA
analysis_software MinKNOW 20.06.18, MinKNOW Core 4.0.5, Bream 6.0.10, Guppy 4.0.11
analysis_software_version MinKNOW 20.06.18, MinKNOW Core 4.0.5, Bream 6.0.10, Guppy 4.0.11
ancillary_notes NA
associated_media NA
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/promethion/BPAOPS-1106/20210705_AusARG_RamaciottiGarvan_PAG89453/
certainty certain
class Amphibia
collection_date 2020-12-08
collection_method by hand
collector Simon Clulow
collector_sample_id NA
common_name Ornate Burrowing Frog
country Australia
data_context Reference Genome
data_custodian Renee Catullo
data_type ONT-promethion
dataset_id 102.100.100/351740
date_of_transfer 2021-07-07
date_of_transfer_to_archive 2021-07-07
death_date 2020-12-21
decimal_latitude_public -29.283158
decimal_longitude_public 153.013391
description PromethION
experimental_design ONT PromethION
facility RamaciottiGarvan
facility_project_code Q0005294
facility_sample_id PBXP142368
family Limnodynastidae
flowcell_id PAG89453
flowcell_type PRO002
folder_name 20210705_AusARG_RamaciottiGarvan_PAG89453
genotypic_sex not determined
genus Platyplectrum
identified_by Simon Clulow
institution_name University of Canberra
latitude -29.283158
library_construction_protocol LSK110, ligation
library_id 102.100.100/350751
library_layout single
library_location Garvan
library_prep_date 2021-06-21
library_source GENOMIC
library_strategy WGS
library_type ONT-PromethION
lifestage adult
location_text Whiporie 1
longitude 153.013391
metadata_revision_date 2024-11-15
metadata_revision_filename AusARG_Metadata_master_QCIF_20241115_FORDATAPORTAL.xlsx
method_of_determination internal examination
order Anura
phenotypic_sex male
phylum Chordata
prior_genetics NA
project_aim Reference genome
sample_custodian Arthur Georges
sample_id 102.100.100/349750
sample_quality high
sequencing_facility Ramaciotti/Garvan
sequencing_kit_chemistry_version LSK110
sequencing_model PromethION
sequencing_platform OXFORD_NANOPORE
species ornatum
species_name Platyplectrum ornatum
specimen_id SCL_006
specimen_id_description University of Canberra
state_or_region New South Wales
subspecies marmoratum
taxon_id 2741728
taxonomic_group frog
ticket BPAOPS-1106
tissue_collection Arthur Georges Lab
tissue_number SC045/SC042
tissue_preservation frozen
tissue_type heart/muscle
type_status no
voucher_or_tissue_number SC045/SC042
wild_captive wild
work_order 13014