Phylogenomics, Illumina Capture, unknown
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:10:ausarg-consortium-members |
| Access Control Date | 2023-11-24 |
| Access Control Mode | date |
| Sequence Data Type | Illumina Capture |
| access_rights | No restrictions |
| ala_specimen_url | NA |
| analysis_software | Bcl2Fastq |
| ancillary_notes | NA |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/exon_capture/brf/BPAOPS-1517/20231113_AusARG_BRF_351862_HVL5GDRX3/ |
| certainty | NA |
| class | Reptilia |
| collection_date | 2013-04-27 |
| collection_method | NA |
| collector | Paul Oliver | Mike Sale | Ken Aplin |
| collector_sample_id | NA |
| country | Papua New Guinea |
| data_context | Phylogenomics |
| data_custodian | Jane Melville |
| data_type | Illumina Capture |
| dataset_id | 102.100.100/351862 |
| date_of_transfer | 2023-11-14 |
| date_of_transfer_to_archive | 2023-11-16 |
| decimal_latitude_public | -5.6925 |
| decimal_longitude_public | 141.6627777778 |
| description | Short reads |
| dna_treatment | 60 sec sonication |
| experimental_design | Capture probes |
| facility | BRF |
| family | Agamidae |
| file_type | FASTQ |
| flowcell_id | HVL5GDRX3 |
| flowcell_type | Novaseq SP |
| folder_name | 20231113_AusARG_BRF_351862_HVL5GDRX3 |
| genotypic_sex | not determined |
| genus | Hypsilurus |
| habitat | NA |
| identified_by | NA |
| insert_size_range | 150bp PE |
| institution_name | Museums Victoria |
| library_comments | NA |
| library_construction_protocol | NEXTFLEX_2.0_RapidDNASeq |
| library_id | 102.100.100/454925 |
| library_index_id | p7_UDI_0940 |
| library_index_id_dual | p5_UDI_0940 |
| library_index_seq | TTCAGCAGTA |
| library_index_seq_dual | TTCCACCATT |
| library_layout | paired end |
| library_location | ANU EBL Freezer |
| library_ng_ul | 10.8309716733 |
| library_oligo_sequence | GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTCAGCAGTAATCTCGTATGCCGTCTTCTGCTTG |
| library_oligo_sequence_dual | AATGATACGGCGACCACCGAGATCTACACAATGGTGGAAACACTCTTTCCCTACACGACGCTCTTCCGATCT |
| library_pcr_cycles | 12 |
| library_pcr_reps | 1 |
| library_prep_date | 2023-05-09 |
| library_prepared_by | Leo Tedechi / Jo Sumner |
| library_selection | Hybrid Selection |
| library_source | GENOMIC |
| library_strategy | Targeted-Capture |
| library_type | Exon Capture |
| lifestage | unknown |
| location_text | Pnyang Ranges EIS, track south from Camp 1 |
| material_conc_ng_ul | 290.9 |
| material_extracted_by | Leo Tedeschi |
| material_extraction_date | 2023-03-01 |
| material_extraction_method | Chloroform |
| material_extraction_type | DNA |
| metadata_revision_date | 2024-11-15 |
| metadata_revision_filename | AusARG_Metadata_master_QCIF_20241115_FORDATAPORTAL.xlsx |
| method_of_determination | NA |
| n_libraries_pooled | 284 |
| order | Squamata |
| phenotypic_sex | unknwon |
| phylum | Chordata |
| project_aim | Phylogenomics |
| sample_custodian | Jane Melville |
| sample_id | 102.100.100/412163 |
| sample_quality | unknown |
| sequencing_facility | Biomolecular Research Facility - ANU |
| sequencing_kit_chemistry_version | 300 cycles |
| sequencing_model | NovaSeq 6000 |
| sequencing_platform | Illumina |
| source_population | NA |
| species | modestus |
| specimen_id | NMV SJR14751 |
| specimen_id_description | Museums Victoria Herpetology Collection |
| state_or_region | Western Province |
| subspecies | NA |
| taxon_id | 206594 |
| taxonomic_group | Squamata |
| ticket | BPAOPS-1517 |
| tissue_collection | Museums Victoria Herpetology Collection |
| tissue_number | SJR14751 |
| tissue_preservation | ethanol |
| tissue_type | unknown |
| type_status | NA |
| voucher_or_tissue_number | NMV SJR14751 |
| wild_captive | wild |
| work_order | 13073 |