Australian Microbiome Amplicons A16S 102.100.100/405435 M6HG4
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
| Access Control Date | 2025-12-01 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| am_environment | Marine |
| amplicon | A16S |
| analysis_software | Local Run Manager |
| analysis_software_version | 4.1.0 |
| analytical_platform | MiSeq |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/a16s/BPAOPS-1892/250815_AM_A16_UNSW_M6HG4/ |
| biotic_relationship | Free-living |
| ccg_jira_ticket | BPAOPS-1892 |
| collection_date | 2024-12-12T00:00:00 |
| comments | 405435_A16_M6HG4_AAGACTCTCG-GAAGGAGAGC |
| data_type | A16S |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| date_of_transfer | 2025-09-02 |
| date_of_transfer_to_archive | 2025-09-03 |
| description | MiSeq data package |
| dilution_used | Neat |
| dna_concentration_submitter (ng/μL) | 3.77 |
| dna_concentration_submitter_meth | meth_3.3.3 |
| env_broad_scale | 7 Other |
| env_local_scale | 7.2.1 Open ocean water-conservation |
| env_medium | Sea water [ENVO_00002149] |
| flow_id | M6HG4 |
| folder_name | 250815_AM_A16_UNSW_M6HG4 |
| funding_agency | IMOS|CSIRO |
| general_env_feature | Marine - neritic (coastal off shore) |
| geo_loc_name | Australia:Eastern Indian Ocean coastal waters of Western Australia [GAZ_00051147] |
| imos_site_code | NRSROT |
| index | AAGACTCTCG-GAAGGAGAGC |
| lat_lon (decimal_degrees) | -32.0 115.4167 |
| latitude (decimal_degrees) | -32.0 |
| longitude (decimal_degrees) | 115.4167 |
| nrs_sample_code | ROT20241212_20 |
| nrs_trip_code | ROT20241212 |
| omics | Genomics |
| pass_fail | P |
| reads | 58881.0 |
| sample_attribution | IMOS|CSIRO |
| sample_database_file | AM_db_v4.2_202508201559.db |
| sample_id | 102.100.100/405435 |
| sample_metadata_ingest_date | 2025-08-20 15:59:43 |
| sample_metadata_ingest_file | national_reference_stations_metadata_mapping_JV14082025_FullREPLACE_csv |
| sample_site_location_description | Rottnest Island |
| sample_submitter | Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938] |
| sample_type | Pelagic |
| sequencing_facility | Ramaciotti |
| target | A16 |
| ticket | BPAOPS-1892 |
| url | https://www.ncbi.nlm.nih.gov/biosample/?term=102.100.100/405435 |
| utc_date_sampled | 2024-12-12 |